3300002756: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23

Overview

Basic Information

• IMG/M Taxon OID: 3300002756
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103000 | Gp0061308 | Ga0006272
• Sample Name: Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 251269858
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Clay → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Mt. Terri Underground Rock Laboratory, Switzerland, That Are Autotrophic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → borehole → clay soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mt. Terri, Switzerland
• Coordinates
  • Lat. (^o): 47.379
  • Long. (^o): 7.1648
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002279	Metagenome	575	Y
F005365	Metagenome / Metatranscriptome	403	Y
F082508	Metagenome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25321J39296_1048862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804
JGI25321J39296_1057186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727
JGI25321J39296_1090062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25321J39296_1048862	JGI25321J39296_10488622	F002279	MAAQPVTPPRPQYDWAKLVGHSLKQNGPWATWEKLVEARRAYPEDMLLRGYAEIVRNTIVRDLLAGPKGLQAAPKLTPDFLADFDRFNLTAQEGYLISLIDGRITLEMLLKLTPFDNFTTLFNMAKLEHQKAITIPS*
JGI25321J39296_1057186	JGI25321J39296_10571861	F005365	SRLQRSLAHLFGEAEDEQDRVTIMLELIRILENKLVYLQNFAIDPTSDNRMFASLVDRFIEELSGSGSPVLTPLESTYYRAIAALYAGDRIGARQGFSAACSSEESDEANDIKYKSYVILGNLSHEEHEYEEARKLHDASLRYSTNDNVTAQALAFKALNSYALHEYDEALELFERSLELFDREAPLFNSYFYRNALLFCGAIHYDRKAYDTAGEYYDRVLREVDQSSYDYFDALGQLGR
JGI25321J39296_1090062	JGI25321J39296_10900621	F082508	SLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSVTGRKTHEDHFGIIDRVLWPVVNEGRTERAGYIFLGSWFLEQLRHEAGAYIDWDVLRDLPPIARKLYGLL