3300002689: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_165m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002689
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055328 | Ga0005236
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_165m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37962238
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034189	Metagenome / Metatranscriptome	175	Y
F034764	Metagenome / Metatranscriptome	174	Y
F046847	Metagenome / Metatranscriptome	150	N
F066454	Metagenome / Metatranscriptome	126	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005236J37288_1004447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	880
Ga0005236J37288_1008926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3001
Ga0005236J37288_1015541	Not Available	553
Ga0005236J37288_1043654	Not Available	650

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005236J37288_1004447	Ga0005236J37288_10044472	F066454	MSIRLDVLILINSGVTDRSEIVERLGINIRSVSNCVRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTDVEVFPPCRLLRVMIYVSLSRTTKINTIRSVKG*
Ga0005236J37288_1008926	Ga0005236J37288_10089261	F034764	MIQNTSNKPPYVFVPVEYPELAEGEEIQPYQPGFICVEWLELEIIEPSEYN*
Ga0005236J37288_1015541	Ga0005236J37288_10155411	F046847	VMPDVDKTVEVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKVDATSNRASLDVGERVKSAKTMAE
Ga0005236J37288_1043654	Ga0005236J37288_10436542	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGL