3300002684: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002684
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054874 | Ga0005277
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30955407
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F016881	Metagenome / Metatranscriptome	244	Y
F018015	Metagenome / Metatranscriptome	237	Y
F039110	Metagenome / Metatranscriptome	164	Y
F046847	Metagenome / Metatranscriptome	150	N
F073643	Metagenome / Metatranscriptome	120	Y
F089529	Metagenome / Metatranscriptome	109	N
F098669	Metagenome / Metatranscriptome	103	N
F102126	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005277J37296_1001077	Not Available	504
Ga0005277J37296_1008312	Not Available	907
Ga0005277J37296_1009381	Not Available	1234
Ga0005277J37296_1009592	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	546
Ga0005277J37296_1011416	All Organisms → Viruses → Predicted Viral	1239
Ga0005277J37296_1011813	Not Available	741
Ga0005277J37296_1015233	Not Available	896
Ga0005277J37296_1017543	All Organisms → Viruses → Predicted Viral	2206
Ga0005277J37296_1037889	All Organisms → cellular organisms → Bacteria	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005277J37296_1001077	Ga0005277J37296_10010771	F098669	METATRGRKQKWRLKEAEGLGRKWRIEETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKK
Ga0005277J37296_1003971	Ga0005277J37296_10039711	F005649	LTIECNTSLSTTCYNRLTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA
Ga0005277J37296_1008312	Ga0005277J37296_10083121	F089529	SNPTYGIDTGSVKSAITKDGEHIYVSKGEQIPYEDGFRVCVGQERVPGEITSTYSHISQERWDAIFGNKGK*
Ga0005277J37296_1009381	Ga0005277J37296_10093812	F016881	MAVLQDKAWYQSKTIWTSVIAGVIGVLQATGYVDQVPEVVWTLLASFGLYSVRDAVGKSGK*
Ga0005277J37296_1009592	Ga0005277J37296_10095921	F018015	MKDRQIYEMNKKWREFRLDEKLNEENESLWTWVYKGVLGGFKKAEKKGGGSVSLDEVARGVAFLIKTEFGGGAKNDFVKSLKKYIR*
Ga0005277J37296_1011416	Ga0005277J37296_10114163	F039110	MSKVAKKAVAKKATKHQLKALINGSHGIDGGIYTYKVGDIVTLSKKSHYDSMKELVDRFSEV*
Ga0005277J37296_1011813	Ga0005277J37296_10118132	F039110	VSKAVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
Ga0005277J37296_1015233	Ga0005277J37296_10152331	F102126	MGSKGKDVQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQQEFYSEHY*
Ga0005277J37296_1017543	Ga0005277J37296_10175431	F046847	VNVMPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNRASLDVNDRIKSTKTMAELRALQNEI*
Ga0005277J37296_1017543	Ga0005277J37296_10175433	F039110	MGKVTKTAVAKKVTKPQLKAICDGSHCIDGGIYTFKTGDVITLSKKSHYESMKGLSCFNEV*
Ga0005277J37296_1037889	Ga0005277J37296_10378891	F073643	MMIVNVKLESVETVEEFLARGNKIEKSEKVLGSKSLNLFSRYSANYRAGSGKTRMGKNGSGKARMSESYTSIKHLSAT*