3300002666: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_100m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002666
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055384 | Ga0005254
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_100m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8916971
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005848	Metagenome / Metatranscriptome	388	Y
F006550	Metagenome / Metatranscriptome	370	N
F015154	Metagenome / Metatranscriptome	257	Y
F015413	Metagenome / Metatranscriptome	255	Y
F016399	Metagenome / Metatranscriptome	247	Y
F042625	Metagenome / Metatranscriptome	158	Y
F073414	Metagenome / Metatranscriptome	120	N
F081198	Metagenome / Metatranscriptome	114	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005254J37290_100040	Not Available	511
Ga0005254J37290_101456	All Organisms → Viruses → Predicted Viral	2267
Ga0005254J37290_101798	Not Available	759
Ga0005254J37290_101967	All Organisms → Viruses → Predicted Viral	1162
Ga0005254J37290_103056	Not Available	942
Ga0005254J37290_103134	Not Available	673
Ga0005254J37290_103627	Not Available	775
Ga0005254J37290_103681	Not Available	827
Ga0005254J37290_106118	Not Available	876
Ga0005254J37290_106282	Not Available	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005254J37290_100040	Ga0005254J37290_1000401	F098669	METATRGRKQKWRLKEAEGLGRKWRIEETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005254J37290_101456	Ga0005254J37290_1014563	F006550	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT*
Ga0005254J37290_101798	Ga0005254J37290_1017981	F073414	DCNKKTEADDNECPEGQSFDVSQGKCVAKESAFGDPKADSTIGDLAGEGADVGDKQTVEGCPEGHSINPDSGVCEPGASADKTDNIGQTNTSIATEKKLASIEKSLKALSEKKPTAQVGLDDGIHSWKTVAENMAPSLRKFGKFEFDINLESLRSVNTKQTRDRSGQVTESFRASPLQLQEAVSISGTHATQDLDTDVAIVPGGLSFRPVFEFAKVKKIEAGMDRARFFKTTIPANGSQTVGSTPSQATQTF
Ga0005254J37290_101967	Ga0005254J37290_1019671	F081198	EKSNEDTLKAVIETVKDAWQPKSEVAESTNQGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005254J37290_103056	Ga0005254J37290_1030561	F006550	TESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEE
Ga0005254J37290_103134	Ga0005254J37290_1031341	F016399	SIRRVARRGSRGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005254J37290_103134	Ga0005254J37290_1031342	F005848	MALPVQRTYAATIAALNAPVFMTDNQTGLTSFLTLTPNVLQDITNLIDPAATQILQYTLVKNGNATSVRAFSPSISATTAGRVPIGPVSMSSGSYQWQAVQSAGVLFNGQILVRYGSPLN
Ga0005254J37290_103627	Ga0005254J37290_1036271	F015413	MESHDLEKQVESLLATPQFEQPQFEQLLPRGIFGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0005254J37290_103681	Ga0005254J37290_1036812	F042625	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLEGKVSE
Ga0005254J37290_106118	Ga0005254J37290_1061181	F081198	EFMDKLFESGYNKLVLEKEGWIQTHTSQKQSGNGEVQEAVSTSGTIPGVKTASNISIQLGAKTAIPIRQYGQFQAVPVGQNTARFYRITVPDAGAITESPTTDITASTHTLTSIDVTCSIRGWRQTVEKAELEDYPASFLNAIRETARLESIRDEHKLILQDLASTARDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFEALISSTSLSEYTQIGNASVTRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKAW
Ga0005254J37290_106282	Ga0005254J37290_1062821	F015154	SSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*