3300002594: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_12H

Overview

Basic Information

• IMG/M Taxon OID: 3300002594
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0093366 | Ga0041819
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_12H
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3566780
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → unclassified Caballeronia → Caballeronia sp. AAUFL_F1_KS47	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker 113, Axial Seamount, Northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.922741
  • Long. (^o): -129.988104
  • Alt. (m): N/A
  • Depth (m): 1522

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042865	Metagenome / Metatranscriptome	157	N
F051069	Metagenome / Metatranscriptome	144	N
F058934	Metagenome / Metatranscriptome	134	N
F058997	Metagenome / Metatranscriptome	134	N
F074867	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
FS9038012H_100091	Not Available	513
FS9038012H_101130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter autotrophicus	781
FS9038012H_102242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	506
FS9038012H_102416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → unclassified Caballeronia → Caballeronia sp. AAUFL_F1_KS47	617
FS9038012H_103097	Not Available	621

Sequences

Scaffold ID	Protein ID	Family	Sequence
FS9038012H_100091	FS9038012H_1000912	F042865	MALRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVAPENIVRANKSCLYIQSTGGTAVLWFNPNGNGSATGWIVK*
FS9038012H_101130	FS9038012H_1011301	F051069	MAYRVSISSTELVTRAEVVAYAKIENTDENTIIDALITSSREELENLLKIPLITQVWAQTYDSFIEPVYAPFIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLEAAKIPASVLSMVGHLRVFSV*
FS9038012H_102242	FS9038012H_1022421	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANGRKFHNWWNRDGVGESVIGAGLVDITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
FS9038012H_102416	FS9038012H_1024161	F058934	GQTIPTANPVIADADGFLASFYWTGTVDVVLTDENNNLIDSANGIQDLVSTINAIVVAGNITLPFGYASGDGDTITTILPIASDFSDGGVFVVRANTANSGASNTPNLQVNSYASRRIKKIGGVALIASDIVSGMNMILVYNKAQNCYYLINHEATFLKRDGTAKMLGAIDMDSHKITNLTAGTDNGDAVNYLQLGGDSSREFLA
FS9038012H_103097	FS9038012H_1030973	F058997	MIIYKGREMTVREACALMGIDCDDFMAWCKKFALQNYSYALNYYKRTLKFKK*