3300002543: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061318 | Ga0006569
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131101666
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001417	Metagenome / Metatranscriptome	699	Y
F001784	Metagenome / Metatranscriptome	635	Y
F003289	Metagenome / Metatranscriptome	495	Y
F056350	Metagenome / Metatranscriptome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25331J36430_1000448	All Organisms → cellular organisms → Bacteria → Proteobacteria	25451
JGI25331J36430_1001365	All Organisms → cellular organisms → Bacteria → Proteobacteria	13201
JGI25331J36430_1014445	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1263
JGI25331J36430_1020143	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	901

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25331J36430_1000448	JGI25331J36430_100044826	F001417	VQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI*
JGI25331J36430_1001365	JGI25331J36430_10013656	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAXXGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
JGI25331J36430_1014445	JGI25331J36430_10144451	F003289	MWGNVTIEANLQSNFNIGFTNTKTDILIHLTQ*QY*W*F*FSFLWAFYYLTILKIVRFRTLKFRPRIATTLRPHGK*GDLIICIIPVS*CANIISNSNFILRMIE*QSEASLLTVRIRGKQWY*VYKFELKTFTDVLTVPKNIGRNK*QISTPGDLQVADDYLHILQLRAQNK*VKNY*SDMVKKTSKTKNFHLISPQEQLRYDFF
JGI25331J36430_1020143	JGI25331J36430_10201431	F056350	MPITFFNLIRYFTVLSVSFHDVNSLFGFFILLTVFSQLVSGTMLSFSLIPEPMLVPIVRDEEDLEDLYTDDFFWIHERGVDLLFIFS*MHLFRKLYINAFEYENEIAW