Sample 3300002523

Overview

Basic Information
IMG/M Taxon OID	3300002523 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0061313 \| Ga0006564
Sample Name	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	349365063
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
Not Available	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000911	Metagenome / Metatranscriptome	840	Y
F001417	Metagenome / Metatranscriptome	699	Y
F001784	Metagenome / Metatranscriptome	635	Y
F003852	Metagenome / Metatranscriptome	465	Y
F007999	Metagenome	341	Y
F011252	Metagenome / Metatranscriptome	293	Y
F020508	Metagenome / Metatranscriptome	223	Y
F036417	Metagenome / Metatranscriptome	170	Y
F059693	Metagenome / Metatranscriptome	133	Y
F064351	Metagenome	128	Y
F079734	Metagenome	115	Y
F090842	Metagenome / Metatranscriptome	108	Y

Family

Category

Number of Sequences

3D Structure?

F000911

Metagenome / Metatranscriptome

840

F001417

Metagenome / Metatranscriptome

699

F001784

Metagenome / Metatranscriptome

635

F003852

Metagenome / Metatranscriptome

465

F007999

Metagenome

341

F011252

Metagenome / Metatranscriptome

293

F020508

Metagenome / Metatranscriptome

223

F036417

Metagenome / Metatranscriptome

170

F059693

Metagenome / Metatranscriptome

133

F064351

Metagenome

128

F079734

Metagenome

115

F090842

Metagenome / Metatranscriptome

108

Scaffold	Taxonomy	Length	IMG/M Link
JGI25326J35508_1000012	All Organisms → cellular organisms → Bacteria	102481	Open in IMG/M
JGI25326J35508_1001355	All Organisms → cellular organisms → Bacteria → Proteobacteria	18340	Open in IMG/M
JGI25326J35508_1001689	All Organisms → cellular organisms → Bacteria → Proteobacteria	16042	Open in IMG/M
JGI25326J35508_1007234	All Organisms → cellular organisms → Bacteria	5097	Open in IMG/M
JGI25326J35508_1008212	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4506	Open in IMG/M
JGI25326J35508_1011345	All Organisms → cellular organisms → Bacteria	3264	Open in IMG/M
JGI25326J35508_1013308	All Organisms → cellular organisms → Bacteria	2792	Open in IMG/M
JGI25326J35508_1014116	All Organisms → cellular organisms → Bacteria → Proteobacteria	2636	Open in IMG/M
JGI25326J35508_1022085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1693	Open in IMG/M
JGI25326J35508_1023773	Not Available	1570	Open in IMG/M
JGI25326J35508_1034892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1075	Open in IMG/M
JGI25326J35508_1049896	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	777	Open in IMG/M
JGI25326J35508_1056314	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI25326J35508_1000012

All Organisms → cellular organisms → Bacteria

102481

Open in IMG/M

JGI25326J35508_1001355

All Organisms → cellular organisms → Bacteria → Proteobacteria

18340

Open in IMG/M

JGI25326J35508_1001689

All Organisms → cellular organisms → Bacteria → Proteobacteria

16042

Open in IMG/M

JGI25326J35508_1007234

All Organisms → cellular organisms → Bacteria

5097

Open in IMG/M

JGI25326J35508_1008212

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus

4506

Open in IMG/M

JGI25326J35508_1011345

All Organisms → cellular organisms → Bacteria

3264

Open in IMG/M

JGI25326J35508_1013308

All Organisms → cellular organisms → Bacteria

2792

Open in IMG/M

JGI25326J35508_1014116

All Organisms → cellular organisms → Bacteria → Proteobacteria

2636

Open in IMG/M

JGI25326J35508_1022085

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

1693

Open in IMG/M

JGI25326J35508_1023773

Not Available

1570

Open in IMG/M

JGI25326J35508_1034892

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

1075

Open in IMG/M

JGI25326J35508_1049896

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

777

Open in IMG/M

JGI25326J35508_1056314

All Organisms → cellular organisms → Bacteria

703

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI25326J35508_1000012	JGI25326J35508_100001247	F036417	VTCASTRCINRYGPLPIIDMVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR
JGI25326J35508_1001355	JGI25326J35508_100135514	F001417	MDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI
JGI25326J35508_1001689	JGI25326J35508_10016899	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAARNGIQVAMMHSVEALMNSIYDLCTSKLQQPEL
JGI25326J35508_1007234	JGI25326J35508_10072346	F007999	VAAVDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK
JGI25326J35508_1008212	JGI25326J35508_10082127	F011252	VSQYVFVDPGASFALPDSFDFEDYIETERELWALFPETEGKRANFGQVGLTAQIYVEVPDDGSDPGLDETYILMPCPDKTMKPIRMKACRRLTLTEYRMGHLTALKLMGKMNAAARVMQEVGRQILGEEVMEEVRARMQPKEEDDDENGNE*
JGI25326J35508_1011345	JGI25326J35508_10113453	F003852	MSTVYNPESEIMAEIERLELEVRDTRRRLENAKNDADRKVLNKQIDELKAQIEFLRKQLP
JGI25326J35508_1013308	JGI25326J35508_10133083	F000911	MSISMEKFASHGHFATYDPFGRSDRGTTIFQLQCRSCGYEADNAVSAPSFCPKCHSEAWERFVRPGSILENAARY
JGI25326J35508_1014116	JGI25326J35508_10141165	F020508	MLHFDSPAMEVLFWCVVACAAVLLLFIGYRLGRWIATAQSQALLEQKERDLFTAQKGFKQLYETELANLRARNAELAQKNEHLAQKVEEYRKKAAGFGGLFSSGGKRADAMYALLLENEALEEALHRQNEKLSQERTDALKESLRNTGYRRVLMSQLLNDDRIKNYVAEIINDESRLPPPNSARQSLPHGEQE
JGI25326J35508_1022085	JGI25326J35508_10220853	F090842	MVQRFLDVVLRRERVEPDVPICPDHKTEMRLRGKLGRPTRFSHQTEEEYTLIYFCPVEGCNNTAMVERVRTQIPVPGEAPERPPFARRG
JGI25326J35508_1023773	JGI25326J35508_10237731	F059693	MTIRRSGLGRRETSGPPVMPCGALDSVGRPRRESGESEPGTSEVRVRAIRLGGRHRSDASRVFPTGRSQDLVVSKGASREEVRSSV
JGI25326J35508_1034892	JGI25326J35508_10348922	F079734	MTVRIYLQAARLLPGPPQAGDLPAERIFIHASDVPELWVETESIAVPPPGRAVSFALARPLDIGIGRVVGTIERAVRKSTKQRLNIAR
JGI25326J35508_1049896	JGI25326J35508_10498961	F036417	VLVRLATDDGEFVFRARWQRSALELQRNILFRMRRGSLLWFQDEWGHDLCFRPECVHAAMVDGR
JGI25326J35508_1056314	JGI25326J35508_10563142	F064351	MIQNQAMMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR

Scaffold ID

Protein ID

Family

Sequence

JGI25326J35508_1000012

JGI25326J35508_100001247

F036417

VTCASTRCINRYGPLPIIDMVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR

JGI25326J35508_1001355

JGI25326J35508_100135514

F001417

MDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI

JGI25326J35508_1001689

JGI25326J35508_10016899

F001784

MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAARNGIQVAMMHSVEALMNSIYDLCTSKLQQPEL

JGI25326J35508_1007234

JGI25326J35508_10072346

F007999

VAAVDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK

JGI25326J35508_1008212

JGI25326J35508_10082127

F011252

VSQYVFVDPGASFALPDSFDFEDYIETERELWALFPETEGKRANFGQVGLTAQIYVEVPDDGSDPGLDETYILMPCPDKTMKPIRMKACRRLTLTEYRMGHLTALKLMGKMNAAARVMQEVGRQILGEEVMEEVRARMQPKEEDDDENGNE*

JGI25326J35508_1011345

JGI25326J35508_10113453

F003852

MSTVYNPESEIMAEIERLELEVRDTRRRLENAKNDADRKVLNKQIDELKAQIEFLRKQLP

JGI25326J35508_1013308

JGI25326J35508_10133083

F000911

MSISMEKFASHGHFATYDPFGRSDRGTTIFQLQCRSCGYEADNAVSAPSFCPKCHSEAWERFVRPGSILENAARY

JGI25326J35508_1014116

JGI25326J35508_10141165

F020508

MLHFDSPAMEVLFWCVVACAAVLLLFIGYRLGRWIATAQSQALLEQKERDLFTAQKGFKQLYETELANLRARNAELAQKNEHLAQKVEEYRKKAAGFGGLFSSGGKRADAMYALLLENEALEEALHRQNEKLSQERTDALKESLRNTGYRRVLMSQLLNDDRIKNYVAEIINDESRLPPPNSARQSLPHGEQE

JGI25326J35508_1022085

JGI25326J35508_10220853

F090842

MVQRFLDVVLRRERVEPDVPICPDHKTEMRLRGKLGRPTRFSHQTEEEYTLIYFCPVEGCNNTAMVERVRTQIPVPGEAPERPPFARRG

JGI25326J35508_1023773

JGI25326J35508_10237731

F059693

MTIRRSGLGRRETSGPPVMPCGALDSVGRPRRESGESEPGTSEVRVRAIRLGGRHRSDASRVFPTGRSQDLVVSKGASREEVRSSV

JGI25326J35508_1034892

JGI25326J35508_10348922

F079734

MTVRIYLQAARLLPGPPQAGDLPAERIFIHASDVPELWVETESIAVPPPGRAVSFALARPLDIGIGRVVGTIERAVRKSTKQRLNIAR

JGI25326J35508_1049896

JGI25326J35508_10498961

F036417

VLVRLATDDGEFVFRARWQRSALELQRNILFRMRRGSLLWFQDEWGHDLCFRPECVHAAMVDGR

JGI25326J35508_1056314

JGI25326J35508_10563142

F064351

MIQNQAMMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002523: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences