3300002405: Earthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm

Overview

Basic Information

• IMG/M Taxon OID: 3300002405
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060821 | Gp0055165 | Ga0005524
• Sample Name: Earthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 327507020
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Earthworm Egg Capsule Microbial Community From The University Of Washington, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Annelida → Reproductive System → Egg Capsule → Unclassified → Earthworm Egg Capsule → Earthworm Egg Capsule Microbial Community From The University Of Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: University of Washington, USA
• Coordinates
  • Lat. (^o): 47.0
  • Long. (^o): -122.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033330	Metagenome	177	Y
F077889	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
G312J29652_10003559	Not Available	3136
G312J29652_10022306	Not Available	869
G312J29652_10024641	Not Available	832
G312J29652_10027652	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	793
G312J29652_10034443	Not Available	728
G312J29652_10058643	Not Available	608
G312J29652_10068792	Not Available	577
G312J29652_10069116	Not Available	576
G312J29652_10072713	Not Available	567
G312J29652_10074221	Not Available	563
G312J29652_10084854	Not Available	540
G312J29652_10104405	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
G312J29652_10003559	G312J29652_100035591	F077889	FKXXYFFMSNSVNFYEFIGFITFNIEVHELVYENSFLVDRILVSNVLRATVRRH*
G312J29652_10022306	G312J29652_100223063	F077889	MSNSVNFYELIGFITFNIEVHELVYVYSVLVDRILVSNATVCRH*
G312J29652_10024641	G312J29652_100246412	F077889	MSNSVNFYEFIGFITFNIEVHELVHVYSFLVDRILVSNVQRATARRH*
G312J29652_10027652	G312J29652_100276522	F077889	MSNSVNFYEFIGFITFNIEVHELVYVYSFLVDRILVSNVPRATVGRH*
G312J29652_10034443	G312J29652_100344431	F077889	MSNSVNFYELTGFITFNIEVHELVYEYSVLVDRILVSNVPRATVCRH*
G312J29652_10058643	G312J29652_100586433	F077889	MSNSVNLYEFIGFITFNIEVHELVDVYSFLVDCILVSNVPRATVHRH*
G312J29652_10068792	G312J29652_100687921	F077889	EFIGFITFNIEVHELVYMYSFLVDRILLSNVPRATVRRH*
G312J29652_10069116	G312J29652_100691162	F077889	MSNSVNFYEFILFITFNIEVHELVYVYRFLVDRILVSNVRRATVRRL*
G312J29652_10072713	G312J29652_100727131	F077889	MSDSVNFYEFIGFITFNIEVHELVYVYSFLVDRILVSNVPRATVHRH*
G312J29652_10074221	G312J29652_100742211	F077889	MSNSVNFFEFIGFITFNVEVHELVYVCSFLVYRILVSNVPRATVRRHXNLKT*
G312J29652_10084854	G312J29652_100848541	F077889	VSNSVNFDEFIGFITFNIEVHELVTCSFLVDRILVSNVPHATVLRQLDIKT*
G312J29652_10104405	G312J29652_101044051	F033330	MVSVCVSSLGRTSNYFVELGIKINGQYYRDVLLMEDRLPEIL*