3300002354: Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300002354
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055644 | Ga0003601
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31220231
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	16
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora infestans	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001570	Metagenome / Metatranscriptome	669	Y
F004229	Metagenome / Metatranscriptome	447	Y
F004542	Metagenome / Metatranscriptome	433	N
F004780	Metagenome / Metatranscriptome	423	N
F010896	Metagenome / Metatranscriptome	297	N
F024549	Metagenome / Metatranscriptome	205	Y
F031358	Metagenome / Metatranscriptome	182	Y
F035561	Metagenome / Metatranscriptome	172	N
F036210	Metagenome / Metatranscriptome	170	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F058683	Metagenome / Metatranscriptome	134	N
F072274	Metagenome / Metatranscriptome	121	Y
F073458	Metagenome / Metatranscriptome	120	Y
F073535	Metagenome / Metatranscriptome	120	N
F074372	Metagenome	119	Y
F078245	Metagenome / Metatranscriptome	116	Y
F085212	Metagenome / Metatranscriptome	111	Y
F093256	Metagenome	106	N
F096500	Metagenome	104	Y
F096716	Metagenome / Metatranscriptome	104	N
F098293	Metagenome / Metatranscriptome	104	N
F098811	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J29626_1000633	All Organisms → cellular organisms → Bacteria	3171
B570J29626_1002219	Not Available	1662
B570J29626_1002359	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora infestans	1609
B570J29626_1002711	Not Available	1493
B570J29626_1003029	Not Available	1395
B570J29626_1004900	All Organisms → cellular organisms → Bacteria	1041
B570J29626_1007571	Not Available	806
B570J29626_1007679	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	798
B570J29626_1007682	Not Available	798
B570J29626_1008466	Not Available	754
B570J29626_1008542	Not Available	750
B570J29626_1010485	Not Available	657
B570J29626_1010641	Not Available	651
B570J29626_1010807	Not Available	645
B570J29626_1012113	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	601
B570J29626_1012726	Not Available	581
B570J29626_1013354	Not Available	563
B570J29626_1014373	Not Available	538
B570J29626_1014976	Not Available	524
B570J29626_1015662	Not Available	509
B570J29626_1016011	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29626_1000633	B570J29626_10006331	F096716	MKTKNLFFLLITPLSVIFTLLISSALWSAPAPLIPDSGPIVYLLKPILVSLVYVLGLLVVALLISGGIFVPFQENNSRFAAKFSLALSGISFAAAVFTLTLALSQPLSVVAQIEVIATYGWDVSSVRALLLISLIALVSFLVLQRPNLDRVGLVA
B570J29626_1001145	B570J29626_10011454	F098293	LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGXAFNVNAFHICQTTHLLQHNIIAV*
B570J29626_1002219	B570J29626_10022191	F035561	MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWSSYEWALGGRRPTFRGKTIWNWQRL*
B570J29626_1002359	B570J29626_10023592	F096500	MKTEQQEFIKSLVDSKTKITMKDFFKTIHGKFYARQDISFMEYFLELTENEGEFIVHHEKLIEYGIMSSIRSSAVKVKLDALGLVEDEDYSELQDILQLRPQGGTSTKNVYMLTPEAFKTCLMRSRKYPNQKADPT
B570J29626_1002711	B570J29626_10027111	F035561	KYASSPDLIIFFSLYFFSFLSFFCNMDTVTPNFELANARLADLSERELESYLCHHGPRRYDRNELRTIIAANMQPDIYPERINVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTNFGQPRFWTSYEWTLGGRRPSVRGRRTSMNWQLL*
B570J29626_1003029	B570J29626_10030293	F093256	MIKTRVGKLVKVKNQDKKKAANNTYQAVILNSNGQYNAYLFTDVEITVAAERARKNIEDQVERSVISKLL
B570J29626_1004900	B570J29626_10049001	F098811	NLSLAILDRCDLPKVKVGRLEIDQPGLFAQGPDEKKALSGLTEGLLIIIINILN*
B570J29626_1007571	B570J29626_10075711	F001570	MSLFYWLLLIAAISLTESIITSTGRSQQISNVPHNTTTHTTNENQEETSLQLPRVKRQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSNTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVTLFP
B570J29626_1007679	B570J29626_10076792	F085212	TKDWAHPCPNHIYYLTDDKSKLVAFYNVVTKKVTKMSKPIRFDTRYRTFKELK*
B570J29626_1007682	B570J29626_10076821	F004542	RPITLPPIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNL
B570J29626_1008466	B570J29626_10084661	F058096	ALQRLATLGMIGPDIPLKLTPEAVDDYVMIDNHRNILFESDFEIASIFNALAMSECDEEPEDTEAIIDLILEYKNNRTEIVKFALSHQVI*
B570J29626_1008542	B570J29626_10085421	F031358	TPTIDRTDIRDSPVGMQTTDRINTLGSLAGIXLDLDTIKGLPVGDSQHLASGLHLETGVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS*
B570J29626_1010471	B570J29626_10104712	F073535	ALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEXVHVXYEGQVEGYFNEDQLNRSFYELGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF*
B570J29626_1010485	B570J29626_10104851	F073458	MSAKLIALASEIVDTNPAGAQLIVNLTKAETGADIIEALDNYDSTVLENHTEPVDSEDDDYVTLTDSEGTVTYV*LQFN*
B570J29626_1010641	B570J29626_10106411	F004780	IEISVPEFINPFTVYYVKTIPIAHNTTNRIYTTLKLENKYVAVDPSGSTFLYKPETCATKXTVTTCNPAMLEIHKEAQTCIEALMSPSQIGAGKCIQSMKVEKVDQQSYIYKTENTVIRIFSPFPDTVSTLCGHTLNQNAGTLKEGYTDLSFKSDCVLYTSQMVIYSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLDI
B570J29626_1010807	B570J29626_10108071	F004229	FETTNFTTSPPPYNKDPKNEMYPNVPSAPTMTSPATLQLGKSKPHNAELQESSWEIINVNNLGAKLTRQKSTPALYFHGRTNKVYTLEGTEIPIERPPRNLIIEYQETLLTLPQFSLEQMRLILTNDTIAYDKNLKAYYTPVINSSKRFYHFAYRSLPQPDQ*
B570J29626_1012113	B570J29626_10121131	F010896	ERHVLPKAIPYHRSQRSPSSEGRGGRYSRPGSFGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWACDAFKKLSPQQRLKKIEERELCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKAGVFLCREDVRVEGAGGTSSLHALYDWGATVTLVTHAAAA
B570J29626_1012726	B570J29626_10127261	F078245	GEAVESVAVSSKSDDKQQATQRNTHSVRESLWWIPVIWRALKWFRKHNRKRNVTTVRLRKDEEVIIRKKDSPL*
B570J29626_1013354	B570J29626_10133542	F036210	MRNRILTEKNRLEVQRKYIDHILGSLDFMEIKDRLRDYLDTEKTFESNAALEAEIRHEAPDVLVDNWEDMNEPATLTKGRK*
B570J29626_1014373	B570J29626_10143731	F072274	ENTEMDGYISPNGLWAAVPYGKRYISIYNGEQICLHNTLETAKKFIQKQNRKSK*
B570J29626_1014976	B570J29626_10149761	F074372	MTESDDEKTRKLQDKVYWLELRVKLLQERNKELRQWITKLTNKNHPAR
B570J29626_1015482	B570J29626_10154821	F058683	SGLNINIRKTTALCINTSPRVIQGLNQMGIETPETCKHLGLHLGKNIEDTMEITMRNTEPKRIKRRILGTTPPTDILHRALLINTALIPIYNHIFMALPVQKEMTKEMTKRLHQEILDFLWTKQHDGETIQKRRLVAKDRIPASFNRGGLQVPHPDDTAEGLHLNLLQKI
B570J29626_1015662	B570J29626_10156621	F024549	LEYTYQFADALQAFEAFAKCYDVGFADELATYNLSMPNGKMYTKNFNRIGLVSQK*
B570J29626_1016011	B570J29626_10160111	F048940	PTQDPLFI*IKMTAAQRMEKQFFINFISLINEVQGKQKLPSQVGSYRKSAWVKQVSNPKQKKDALSLV*