3300002344: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - N_134min_Aerobic (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002344
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0057516 | Ga0004992
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - N_134min_Aerobic (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 209833646
• Sequencing Scaffolds: 32
• Novel Protein Genes: 33
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, WI, USA
• Coordinates
  • Lat. (^o): 43.078418
  • Long. (^o): -89.386482
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000243	Metagenome / Metatranscriptome	1476	Y
F001633	Metagenome / Metatranscriptome	660	Y
F002212	Metagenome / Metatranscriptome	582	Y
F003657	Metagenome / Metatranscriptome	474	Y
F004521	Metagenome / Metatranscriptome	434	Y
F007793	Metagenome / Metatranscriptome	344	Y
F008678	Metagenome / Metatranscriptome	329	Y
F010228	Metagenome / Metatranscriptome	306	Y
F010229	Metagenome / Metatranscriptome	306	Y
F013276	Metagenome / Metatranscriptome	272	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24217J29970_1000863	Not Available	561
JGI24217J29970_1001264	All Organisms → cellular organisms → Eukaryota	539
JGI24217J29970_1001644	Not Available	721
JGI24217J29970_1002474	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1526
JGI24217J29970_1002547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	742
JGI24217J29970_1003017	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	775
JGI24217J29970_1003155	Not Available	606
JGI24217J29970_1003350	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	770
JGI24217J29970_1003506	Not Available	520
JGI24217J29970_1003675	Not Available	940

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24217J29970_1000863	JGI24217J29970_10008631	F021903	SSSGSLSLGFSSTYQAGAAANAYEIWVDRPNSSPNQDSILTYLYDTNAFIVVYQNDGTAANTGGKQVLFDARTGVPYAYGFYNTDQWNKVPDTATLWHIIDLSQAAGGIVFNGFPGENNTAQTNAGAGAKYGFDASFFEATKSIPCGHVSSRGANPAYCPATLSYPQSKKK*
JGI24217J29970_1001264	JGI24217J29970_10012641	F033320	MEDVRTTIMSRRLAALPTNSADRIALEDKLTKTIQQRNLIGATINSIARRAFAVNRGDYFELVTSKRMKLTQHDCYMTVTQRIQEKCFDLPNEYVLNKLWVVANLCEVGLQSFTINNAVDSVCNAIGRQNFEY*
JGI24217J29970_1001644	JGI24217J29970_10016441	F021903	ASITLYGTGIINFQNKDQHSSTRTTLPYAKLVTDSAQGYGPEVMDFYGTSSSGSLSLGFSSTYQAGAAANAYEIWVDRPNSSPNQDSILTFLYDTNAFIVVYQNDGTASNAGGKQTLFDARTGVPYAYGFYNTDQWNKIPTDATLWHIIDLSQAAGGILFNGFPGENSTVKPSTVEAGAKYGYDASFFEATKSIPCGHVASRGANPAYCPATLSYPQSKK*
JGI24217J29970_1002474	JGI24217J29970_10024742	F066418	MDLKVCPDGTPAPIPAGECCPSLKACASLIVSSRSGLLGSLGSNANLLQTLTSATHGTDLGTVLSILNLLNNIQQFTNDVHQIPVLINQTLAGLVSGAGQAGQIIVDQLIGSITNQQNNGRDLLGSLGQNVNLLSSIGHLLPQGTSIATVISILNLLNNINALSNDIHQIPVLLNQTLLTLVGGAGEAGQVIVNQLLGLVGVQTQGRDLLGSLGQNVNLLSSIGHLLPQGTSIATVISILNLLNNINALSNDIHQIPVLLNQTLSTLVGGAGEAGQVIVNQLLGLVGVQTQGRDLLGSLGQNVNLLSSIGHLLPQGTSITTVISLLNLLNNVNALNNDLHQIPVVLQETLSNLLNGVQNLLPPTLQPVQGA*
JGI24217J29970_1002547	JGI24217J29970_10025472	F001633	LPDATLRGMRMFRSHGGTVLTVAGRDLLSEASAPGSGAPCRERLAGRGADTPATDVVARRHLYHGDGAGF*
JGI24217J29970_1003017	JGI24217J29970_10030171	F003657	LASVFAFLGVVLGVIALGTNYWTHNYTVAPSVFNDTGMAVRSYNGTTWNGLFKTCYADLPCESNFLALTFILCLLGLLFLLAGGIFSVLDVPKASDRRFITPLLIFVGCVLLTSGLFDYASMRFLNYHSSRAMIAALVFCYTALPISAFVAGRYSALERSVLINNDAHGTQKYSATNGNGL*
JGI24217J29970_1003155	JGI24217J29970_10031551	F084936	QANRSPHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRPANSLFVIPNECKKN*
JGI24217J29970_1003350	JGI24217J29970_10033501	F059673	TGVGKRRVNQRSLLIMFKAMLLSTVLLIICVQFNHGNPHHQIHDDSDISSSSLSSVQATFLKPKANIMRRLNPLKLLFTVAVVPGRNPPYSVEWNLALLKTILLESSHVSDEDKAFFMMEFSNYANDFADWSADKHDQLERFTEKYFNLYKSPETFLPFIDCPALTYALTDEMINDLQPNIDERKRAEVRARAVNRLCDVE*
JGI24217J29970_1003506	JGI24217J29970_10035061	F007793	MSEAQDLKDAFEAFAEGKPHLSKVECMMAIHALCKNPIQSDLNGAMSSMGDDISFAQYQQLFAKAWPRPDQQQSDLSKLMQMLDHDDNGKVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFPI*
JGI24217J29970_1003675	JGI24217J29970_10036751	F063283	DVLTPLLPLWWNYELTNRQWGGSGDLTGTNNSPSFYFYMTPPFGTEDALVRVILSWGTLISNPSSSLPDMDLVIAGPVDQNSIDLYGTGIVNFQNKDQHSKNTVLPYAKLVTDSAQGYGPEVVDFYGSGGLTFGFSQSYAAGAAANAYEIWVDRPNSSPNQDSILTFLYDTNVFLIVYQNDGTTGGNKQVLMDAITRVPYAYGFYNNDQWNNIPDSATLWHVIDFSQATGGIVFNGFPGENSTTDPNAAGAKYGYDAGFFEPTKSIPCGHVASRGASPAYCPATLSYPQSKK*
JGI24217J29970_1003861	JGI24217J29970_10038611	F014948	MQPISILFAFLVGSMLVLTMTYALTTNNNQENEQDIQTSLADMRLKRSLANKRFYDFGSRSLDHIHDENNDDLNDEFNRLRRFYDFGSKKRLATRFYDFGSKKKRSNE*
JGI24217J29970_1004532	JGI24217J29970_10045321	F019441	EFSSLIFQSIIMRFLLISCVLFVSSFHASRAQDIGGIATSVFNDLLSSVVSQWGNMSSSDLAAFIDKLNQPGGLNHVWNALDDHCNSHFDCGPNACCLQPTIQGKRGFTDGNNLHMSSYCSPLKQEGQTCSLYHSGETKSTFSCPCSHGFKCISGGSFQIHPLINIHKNPICKRA*
JGI24217J29970_1004990	JGI24217J29970_10049901	F010228	MSYTTSNSTARAAAGDTGKNLQAELKRNGPYILAGLGVSGGLLLLANKNIPSISVPILSSAADRVAYALRWTGLEGISMVTAVWCVIGVRAKYGIEQTTSTTEGNHHLQITQQMLRNTTESFLTFTAAKLALASVLEANNLRIIPALSGLFILGRYSFDAAINHPCRTFGYTINAVATFTAYGLFLYKLFTGGLHTNLLGFSLR*
JGI24217J29970_1006532	JGI24217J29970_10065321	F004521	MLNQQSGGFSASRAPYVPSVAAPRGVYRASYARPRTGYAYGPRPVARAPVPAGRGPGGAGLLAAILGPIGGLTGCLCCLNTIGVWGLFITAIPLTVYMSRWVAAYKNRNPSNNGAEELVGPHLLLLVLLVCSFLFTFMRRS*
JGI24217J29970_1007326	JGI24217J29970_10073261	F010229	LTKRRKTMLPALRSTTNINRVLTQTLGVLRQHQAFRVPVQHSSAVSVLTDEQRALNLKIWPGVPETVRPMAIDYCPIDPVEFDRLTDRFDPQVNMWKWLSLLVAIPAVALLTYLNLIVPQDHTRPEFKDWDHLRPRMKWPIKDGEHSPFHSKWFNAIHYDGKGYETSDAEFEKHFHHGHH
JGI24217J29970_1007414	JGI24217J29970_10074141	F070917	RETSTFVRDVDALLPFSLHRYRTTSREKKEKRSTRRKMRSIHDSFHHSTNSSHYTSPASGSERAEFHDRYQNRYAWLEKNHVTEVGSTYKSLGKQVDHKPSTWRCEDQAAAGKEFLRANDECADKIYDIRERSDVSRECLLNADGVAPRFYQMEAEALKNRYELNNMKRKLDGIKQMRARLFK*
JGI24217J29970_1008173	JGI24217J29970_10081731	F008678	NLRIQHESSSSSFDFIMTLLRIFPFIGAAIGVSAVVLSIIGVSTKYWFSIGPDVHAGLWYDCKPIVGCAPTQGGRPAALAITALIAIGIGSILAAFSGFARNKPDTPSNLARLCGMVAVILLFSSGILIGAALYTYTGAKTTTGYSFTLMALAQCLSFLGALLVAHWMGSSFYAASS*
JGI24217J29970_1008816	JGI24217J29970_10088161	F049099	LEQNFQKYFWDLCEVGDANKDGNIDLEEWLDVMNDIIIHLKQNGKFPEWYEGLHKALFRSNEFYDDRNVLQEEFVIMMSAWSIDEAAAKRAYDYITENGKKKLDYALFSEFMKQFFTNEESDHPINLGLDKP*
JGI24217J29970_1010065	JGI24217J29970_10100651	F025660	EKRTRRNRLFISRSFAWKTFVSTTMLKLVAYLSFFAIILLFQTSYGFLFGHKDKCPVGPYKGGKDFSGEKIMADKTFAQLLKTAGTVAKACKVRIHVTDSFKQLKTPSEYVPASQMPLALGRGIHIQLRDQKGAVVCNQLCMLSRSWKTLPEAACFLDNVQKKGIKFTEPNLLHDGYVAKLSSTEAEAIKEATQKLCAPKTKGAKG*
JGI24217J29970_1011113	JGI24217J29970_10111131	F069054	LTKRKNRSNIMFLSKYSSSRHVYSKLIERGVLLRSASNAHHSPTETKKTFQTPLSLDPDFRAPPDHELPRAKTSEMKGITFNIRDFYQNYFPNDPVEARTPTPWHMDIYYRKQYYIIGAVLGVLFGLFVSYRRILVDRARRRDWEKHHGDPLSYYDVIGPINPDVKRKVWDDNPNVPKPEGWVSKLHHGEDSH*
JGI24217J29970_1011135	JGI24217J29970_10111351	F061571	VMLRASVLLASFLFVALCFGQIELLIPAGRGYVSGDAQHGPCGQSPSVPSTNLVQWRANSAQEIQVHVLGANGGGVLTNRFSCTLNGDPVNNTAPIYLIRGGLTIEIPDNSYQTYNLRLRAPPTRCVGAATMQLIYTTFGPNGNDGTNYFQCVDLRITTGSPASIATVSYAVVILALSLLFML*
JGI24217J29970_1011767	JGI24217J29970_10117671	F039434	MGILKGKDSALSHIEQSKTAFLATLSEVEQGPSTHTMPPTDHYVLKFSRETIKNLKGRVYETMKQYTYEQRGESIPAFVNNKETDDNQGGILAPTKPAVPTVGQQYVACIYEDLKHIDCLIEIHWSEVDELVKTAQARRKSLV*
JGI24217J29970_1013098	JGI24217J29970_10130981	F020311	SNCTVLLSEALMSKFIVLSIIFYLAVVQLNLSAAKICYQCDDKNPSSKFKIIGEKITKCDGVPFEKYATKTSRAFGAAVLTCYTKFNESGAVIKRGAFGLGETYDKNFKCRDRFHTCCRKPFCNKDNVAPCPPPSKITTKKEVKACYQCKGQENCKPEHLTGAEIRTSGAFGGKNLYCYTKFDPNTGAAVARGGFGFGESIDKNLKCDAKHYLCCYENLCNNQTAGFCAKPKPKKTN*
JGI24217J29970_1017401	JGI24217J29970_10174011	F032160	MEQTDATNNLEVVSMIIWLSTGNGKFFELHGARETIKRVLPKSSDTAFRWGYYNSPADPDRQSYTEVLEAFLKSGFHIEGSSGAGTQGLLRSQYILVKRS*
JGI24217J29970_1024247	JGI24217J29970_10242471	F061886	FNNIRKMNYLTNNVEVSGENLDRSRFRDHYANDYVWVEKNHITAVGVRYDGLSRKVDHKPSTWRCEDEIERGKEYKRMNDECADKIADNRYSIDNSRDWLVDEGGVVDRIHRMSAKNAKARYDLDSIRRKMDNLKSMRARLLH*
JGI24217J29970_1026653	JGI24217J29970_10266531	F015564	VALLSEKVAAAAPAVSHGHSHVQPWEGVNLWRTPYKGDTDTITQVKRNKGTLDQYVENRTRKLQQMQIFALRNKSIPTWIMMPRDKLILGVQVALAGYVLFQVGSMVYQNLKAKDRIKLLKLLYKDNVN*
JGI24217J29970_1035766	JGI24217J29970_10357661	F038054	XMSSLFNPNYFQAILNLISGRSTTLATLWGMFWQAAYALIGCVLGAAVFGNFGALIGTVIGAWLGYRAVNPYHSLISQLNELNDRQKHNLAEEIRRTVGSSNVDNLLRYATNGNGRQLIFDLIQRFMLNNQPQPANVNANFFSRLFSS*
JGI24217J29970_1045061	JGI24217J29970_10450611	F013276	KALLFLALFVTLSFCQIQLLSPHGRGYSEFYSHYAPCGQGSTEVGSSIQFEHATVHQIQVQVIGAGGGGVIFDRWSCVLNGDDENNLGPVFPIEGAMKVSVPDADFQIYNLFVQAPGYRCIGQATLQLVYATNNGQEYYQCQDVIITNTVNGSSMLAANLVLVLLAIFGVLLL*
JGI24217J29970_1046342	JGI24217J29970_10463421	F039434	VINHLSIAMGILKGKDIALEHIEKSKLSFLATLSECEKGPSTNTMPPKDHFTLKFDRDTIKNLKGRVYENMKQYSYEQRGESIPVFLNNREGEDPQTGLINPIKPDTPVVGRQYVSCVYDDLKHIDCLIEIEWDEIDELVKTANARRKSIV*
JGI24217J29970_1050882	JGI24217J29970_10508821	F055860	KSHLLDTNSSTLAFSSTHLLVHDQKKLILFDLKKKLYEFNWNDNEFGILVDMCWMSSISLFVLLTIHSVYLYDPQKSFDNKPVKVESIRPSDRTHVLASLCPLDRDLFINYHKGVHLDQYRVLASSEFVLQRRYSKNDLCETNDIGVRDIRSNGECLCLSIMQNDDCKWRLDLMSRDMVRVRRGVPMDSGENQQKFFSMLIPIDQQRWLFVNWFTNKLWIVDQQGKTRCVKESIIKNIRNCALSSDLNYFAIRNEKPSFVHIYKLDQ*
JGI24217J29970_1062073	JGI24217J29970_10620731	F002212	LKAAAAIALALGVQASEDPVQLCMPKVHTVHVSTFRDVQHEERHRPPDEMKAGDEIQIFFDMGQQKSLVWIHDDGPRSGRREPDHGQLTDYAKQRQWNWDYVNKTVQRCSLQVQTRPMAPICFSPAAVLNGTGTIGEDFPIEFYSEHVVDPSRQVDEMLFTLMEKGSTSKPVKQDRRGRQVQPDRSIVEWFDRISWYNMVETPIDPKVFAVPDACPA*
JGI24217J29970_1074084	JGI24217J29970_10740841	F034481	KMKLVFISFFLAFLAVVYASGSHTAVGENVVPHVQPDQVVNPADWHGSWTAKNRYGGVMYTCPKGDVLYGIYSNAGFLIGTINDRVVEGNWYEGGRGARNFYQGSFKITISDDNQEFDGFFNRVALGQGPFRWHESRLGAPEPSNPTWEECFAPDDSVENLLGSYYRSSETGALSGSYFICEDEWNQIYGSFHQPDGYLSGWSVQDATGFHGYRYDANGQSGAYILRALTRDRVKGFYWRGRVAEQNIGTTSWEALYRNGFTATLNQCEQVGPGFNERLRGPRMEDNSASTLQLAVFALIAMV
JGI24217J29970_1111114	JGI24217J29970_11111141	F000243	EFANPRVMTTLMPEFAEARVMTTLLPEFAHPHTMTTLMPEVAGPNGGVYFDRTINTASHVTGSVTFNAGCAASDQWGSNKCTWNWKQAITATLAGALQEDITTGKLVVDLKLNNVIPFSFSCPLCGANCTFEIPVIKTPVSFAMPPCPIKAVTIPSKSKAFTLPDKNPLGVAASVAGTVQIADQTGSVIFKVSLNAKLS*