3300002334: North Pond borehole 395A, 173 mbsf, polyester segment

Overview

Basic Information

• IMG/M Taxon OID: 3300002334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110096 | Gp0085240 | Ga0022251
• Sample Name: North Pond borehole 395A, 173 mbsf, polyester segment
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 729587621
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Biofilm Microbial Communities From The Mid-Atlantic, From A Ridge-Flank Borehole
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Biofilm → Marine Biofilm Microbial Communities From The Mid-Atlantic, From A Ridge-Flank Borehole

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → borehole → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: North Pond sediment pond, borehole 395A
• Coordinates
  • Lat. (^o): 22.755865
  • Long. (^o): -46.081015
  • Alt. (m): N/A
  • Depth (m): 4484

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096536	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
xDRAFT_10189821	All Organisms → cellular organisms → Bacteria	684
xDRAFT_10199211	Not Available	590
xDRAFT_10523556	Not Available	537
xDRAFT_10527420	Not Available	514
xDRAFT_10977139	Not Available	684

Sequences

Scaffold ID	Protein ID	Family	Sequence
xDRAFT_10189821	xDRAFT_101898211	F096536	PVDAGIVQTNFGNTTDQALCNYDLDCDGQINPVDSGIVQGLLGTCDRPRDVCR*
xDRAFT_10199211	xDRAFT_101992111	F096536	HSFPTRRSSDLPVDSGLVQAAFGSSDEQDLCNYDIDCDGQINPVDSGIVQSLFGTCEAPRAACP*
xDRAFT_10523556	xDRAFT_105235562	F096536	CDGDVDGDEQVNPVDSGLVQAAYGTADGSNLCQFDLDCNGVIDPIDTGIVQSLFGTCDPPRGGCP*
xDRAFT_10527420	xDRAFT_105274202	F096536	GQVNPVDAALVQAAFGSLDDQDICNYDLDCDGHINPVDSGIVHSLLGTCEDPRDVCR*
xDRAFT_10977139	xDRAFT_109771391	F096536	VCSSDLQVNPVDSGLVQAAFGSVDGQDLCNYDADCDGQINPVDSGIVQSLFGTCEAPRNTCP*