Sample 3300002300

Basic Information
IMG/M Taxon OID	3300002300 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055819 \| Ga0003593
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002300 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055819 | Ga0003593

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	20819402
Sequencing Scaffolds	20
Novel Protein Genes	23
Associated Families	23

Dataset Contents

Total Genome Size

20819402

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2
All Organisms → cellular organisms → Bacteria	1
Not Available	15
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Terrabacteria group

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004315	Metagenome / Metatranscriptome	444	Y
F011472	Metagenome / Metatranscriptome	290	Y
F013061	Metagenome / Metatranscriptome	274	N
F015168	Metagenome / Metatranscriptome	257	N
F015180	Metagenome / Metatranscriptome	256	Y
F016479	Metagenome / Metatranscriptome	247	N
F026797	Metagenome / Metatranscriptome	196	N
F029991	Metagenome / Metatranscriptome	186	N
F030674	Metagenome / Metatranscriptome	184	N
F035561	Metagenome / Metatranscriptome	172	N
F036698	Metagenome	169	Y
F046199	Metagenome / Metatranscriptome	151	N
F049428	Metagenome / Metatranscriptome	146	N
F054568	Metagenome / Metatranscriptome	139	N
F058091	Metagenome / Metatranscriptome	135	N
F058683	Metagenome / Metatranscriptome	134	N
F064383	Metagenome / Metatranscriptome	128	N
F066479	Metagenome / Metatranscriptome	126	N
F071160	Metagenome / Metatranscriptome	122	N
F079377	Metagenome / Metatranscriptome	116	N
F098293	Metagenome / Metatranscriptome	104	N
F098722	Metagenome / Metatranscriptome	103	N
F104446	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J29639_100120	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	10203	Open in IMG/M
B570J29639_101022	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
B570J29639_101303	Not Available	1937	Open in IMG/M
B570J29639_101585	Not Available	1640	Open in IMG/M
B570J29639_101760	Not Available	1500	Open in IMG/M
B570J29639_102241	Not Available	1209	Open in IMG/M
B570J29639_102251	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1203	Open in IMG/M
B570J29639_102911	All Organisms → cellular organisms → Bacteria → Terrabacteria group	978	Open in IMG/M
B570J29639_103211	Not Available	914	Open in IMG/M
B570J29639_103227	Not Available	911	Open in IMG/M
B570J29639_103656	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	835	Open in IMG/M
B570J29639_104662	Not Available	708	Open in IMG/M
B570J29639_104798	Not Available	695	Open in IMG/M
B570J29639_104958	Not Available	681	Open in IMG/M
B570J29639_105059	Not Available	672	Open in IMG/M
B570J29639_105230	Not Available	658	Open in IMG/M
B570J29639_106179	Not Available	591	Open in IMG/M
B570J29639_106736	Not Available	558	Open in IMG/M
B570J29639_107562	Not Available	519	Open in IMG/M
B570J29639_107631	Not Available	517	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29639_100120	B570J29639_1001201	F015168	MSRQLIVGNQGRTHQVGAYQGSFRGRERIAYQDLPSIHEIEQILEQLTANITLRTEDIPKRPITLPPIYTELSEXDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVSGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEIHSQASALIMMFTETATHIRTQQALQLSLFIEVTLRLESFYPAEEQNKEPHYVSYLGGYSSNKKALFREVQNEQIKRNPLDLMHQMEETLSADFTTTEEIFNIQRPSSPIFLKLLKQIKNNESYSEKTKQR
B570J29639_101022	B570J29639_1010222	F058091	VEFWKKEAYIIANKITGGNHLHHDLVPHVYLLLAKLNIKEQDLPRVFARWAYNQYNWKESKFNQLYRGSVPIPEGFDKIAEEDVYNETQYQQILDAYLEQSPDNDEELFCKEITKMRLMGMTYREIKGLTGINLDTINKAINKFKYDIHHSSFISGDCQSSPHFSDARHQAI*
B570J29639_101054	B570J29639_1010541	F098293	LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGXINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILXQLVXIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKXAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGKAFNVNAFHICQTTHLLQHNIIAV*
B570J29639_101303	B570J29639_1013032	F046199	EWLLRPFLYYNREKFFQTYEISKEFDFNYITPYNFKRPIFFRRSAPPPSNKTAYLSIFCPVSYKEIQLSYKNKYEQTTTVKYGWTMFSICSYDYLDLSQWSICTTQKPNEITLVSCNKPNFTMYILNDNRVPMSLLNLGLSSLYQNKLNSALNLTKYVVPKTLSQQAPPCYLFHLSPFHLYFSXKSHISSHISDW*
B570J29639_101585	B570J29639_1015851	F035561	MDLVTPNFRLAESVLETLSESQLECYICHHGPREFETQKLRDIVAANMQPDIYPKRKDVYFALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRYWTSYEWALGGRRPTFRGKTIWNWQPL*
B570J29639_101760	B570J29639_1017601	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVETQYTITGIAINIQNMYLQVSKIFYIKILKYLKLKIFEIVQYLKLKLKYLKFKY*
B570J29639_102241	B570J29639_1022411	F026797	MAASCSDGGAAVCSDSDEHIRHVAGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTXTDLYIDSIRLVGFCGAGDINWAIVTRMKESDNPPRESFHGIFPKECLPMLHYMRPQFRFLIYFGQNNGRVNMADELDRFFYDMEKVASG
B570J29639_102251	B570J29639_1022513	F036698	WLEDSVEPEGGFWWHCYLDNNGCLQDYNHPDDEPDTLQWYLDHGYKVEEL*
B570J29639_102911	B570J29639_1029111	F071160	MKLLNFNKLKLTTSINAFDFLKKSLALTLLHVVEFSRYDCALVAKFLLRAGQPIKKVSRHAQKP*
B570J29639_103211	B570J29639_1032111	F049428	REIRNKQVDTAHVLKFITWTLNINITVVKIIFRPPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQLL*
B570J29639_103227	B570J29639_1032272	F004315	MKVVSDVLLLLCLHDFGLRVTAEAGQALACLYSGARLYKGPGQANLPQSAATRSTGNISVRIQKVDHSNTRGIVSSLFFSRSEITAALSLHYQHLMKTKG*
B570J29639_103656	B570J29639_1036561	F066479	KKFFFCRAGDVQHIQENRLFFTPGYYYRPNQLKSMTCLLGNTDARTVYRNFDLANLNVNLADRTHMLYNRYLCYNRFLPPDEKRYFAHLATNTLAVAPGSATDEKGAFNIFPMSLTTEEMNKSTSSALGK*
B570J29639_104662	B570J29639_1046621	F064383	IDSIRLVGFCGAGDINWAIVTRMKESDNPPRESFHGMFPKECLPMLHYMRPQFRFLIYLGQNNSRFNMADELDRFFYDMEKVASGDASVWGAPVVIDGVHILPEVECVVPSWLRQEFFARTSDLGLPAGQHYVYPGVRSPLLLPTDYIRKYFSIYVYI*
B570J29639_104798	B570J29639_1047981	F030674	KPGEPREEPKRSLSGIERNDRRGKGELWPSLDEQRRRAEEEYHRLGGLSHGCRQSWDLKMREEKGPGRKINGLFCWTAKDSLILHEVAKAAGLEGRGYGKKVDSLYVRDMESTCAYCVPLVDWKGEVQYLWARGVDYIARLAGKEDPRKWYAQFSELAMARDTEAERKAPIXMMIALDNWKWMPVRQPLRLYERKAPIEMMIALDNWKWMPVRQPLRLYEYSHDKKVKNRR
B570J29639_104958	B570J29639_1049581	F015180	DCLNAFEAGRVTLLGHMVDLTGNGTGMKTLEERVNCGLQGQGSARGSPGGPGRPHIQLTIRRIAVWKRMATEDAIKKIIIRKAHDILPSHLAGGMDASEGTYVWDHIQRGCSGGEWEELYKGKLGILKGEVITLDQSAGQRAWLKLGEVVTICGKRMRSTHLRRVYVRWTRPQRIREVITTHPTSREEKELEGMRLEWSYQRGRDSYMIRRELREAATGGCWTRGT
B570J29639_105059	B570J29639_1050591	F013061	TTVDRQDYQPASEEQVKSDLRYHLRTIYKLRLIEKNGSGKRYQCLMCLPKYKLIWASKTTYQHLEKHVVAVHPRQHKTYKELMAKKSGYKRKRSPSPNQSTSDSPKVDQSVSKRIKTPGGGGTPVLSFYSQQDYDEDAVIEVVMNMLPFEVCAML*
B570J29639_105230	B570J29639_1052301	F016479	INVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMAEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKK
B570J29639_106156	B570J29639_1061561	F104446	IIYSSYHPRIVHKIMYKYAQVIYPMLRVVARSMIIYLCPLDKKGGRICIDTTLVNGFAYIYLHVNTMRLWVV*
B570J29639_106170	B570J29639_1061701	F058683	IERANDLQPIIDLYNQYTTVSGLNINIRKTTALCINTPPEVTNGLNQMGIETPETCKHLGLHLGKTIEDTIQTTMRNTEPKRIKRRIMGTTPPTDLLHRALLINTALIPIYNHIFMALPVQEESMKELHQEVLDFLWTRQQDGEKIQKRRLVAKDRISASFNKGGLQVPHPSDTAEGLQLNLLQKIYNRIRLPQNF
B570J29639_106179	B570J29639_1061791	F054568	HDSPAFQAEINDKIHNKNRLDFESEDAVELNSYKFPKPRFYNPNRYQSERPMDTFELLSDIARQVGPKERPLTYQDFLEETLRKSIKPKKAKAAVLNSIEKSIKPKKAKAAVLNSIETDPVYLKGINLSIDEQKMVALMDTGSTHNLLAYDVFITLKDKTFTPVNMDMKVAGSTLSNNIVGKAQLNTVFETTTGTV
B570J29639_106736	B570J29639_1067361	F098722	KVAPTKKRSRRSWGGFWGAALSLATEDQLNQALQKEVEITDNERILSSSLFNITITNAQMISSLKTLTTGVSKLVTEEQGIFDQIDTIMDSESQYLEQLNELINLVDKTTTLVADYQMIQLQISLLIHLTEKVKALVNAILTHTIDVTQIPLSIFKPHLQDNLKMTLRLANYKLKQTTGGTVLNI
B570J29639_107562	B570J29639_1075621	F011472	MDPFAQQVQRIENNDKVKEIVEALRLIPIADNDVKTQINASLEKILTPAAHKIPETQKKITEFEFTEPEFSYHDIAERQKYRPMKHGIHYLDEDSTLYYNSAIEASA
B570J29639_107631	B570J29639_1076311	F079377	MPQ*SFFQTAGPTDFQNVLGISFLPANFTIGEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002300: Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences