3300002169: floor swab of Spacecraft Assembly Facility - replicate A (Combined floor swab M2426|M2425|M2424|M2423|M2428|M2427, ASSEMBLY_DATE=20140108)

Overview

Basic Information

• IMG/M Taxon OID: 3300002169
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0056968 | Ga0024822
• Sample Name: floor swab of Spacecraft Assembly Facility - replicate A (Combined floor swab M2426|M2425|M2424|M2423|M2428|M2427, ASSEMBLY_DATE=20140108)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27685365
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: NASA Jet Propulsion Laboratory, Pasadena, California, USA
• Coordinates
  • Lat. (^o): 34.1991
  • Long. (^o): -118.1715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033665	Metagenome / Metatranscriptome	176	Y
F071964	Metagenome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGIcombinedJ26738_111389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	661
JGIcombinedJ26738_114637	Not Available	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGIcombinedJ26738_111389	JGIcombinedJ26738_1113891	F071964	IALERSLSTSPSDVLGDVRALLAAPASSLEELLADRIAGEAVRIVEDLIREAFVVTEFDPDEVYGFMNSEEAAEFLGLPYSSFREIAPSLPRHAITPARFGYLRRELLAWGKDR*
JGIcombinedJ26738_114637	JGIcombinedJ26738_1146372	F033665	MLICGSIGCALAIKIGGEAKTHEISKTQKWSGQILLGLEDIKIINIFNGVPKSKRRKNKILMGINIKLG*