| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300002165 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0056827 | Ga0006069 |
| Sample Name | Marine viral communities from the Subarctic Pacific Ocean - LP-52 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 39994156 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 25 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0003 | Long. (o) | -144.9996 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000479 | Metagenome / Metatranscriptome | 1092 | Y |
| F002274 | Metagenome / Metatranscriptome | 576 | Y |
| F002506 | Metagenome | 553 | Y |
| F003082 | Metagenome / Metatranscriptome | 508 | Y |
| F004879 | Metagenome / Metatranscriptome | 420 | Y |
| F005094 | Metagenome | 412 | Y |
| F007802 | Metagenome / Metatranscriptome | 344 | Y |
| F008888 | Metagenome / Metatranscriptome | 326 | Y |
| F009754 | Metagenome / Metatranscriptome | 313 | Y |
| F012282 | Metagenome / Metatranscriptome | 282 | Y |
| F012782 | Metagenome / Metatranscriptome | 277 | Y |
| F017046 | Metagenome / Metatranscriptome | 243 | Y |
| F018194 | Metagenome / Metatranscriptome | 236 | N |
| F021806 | Metagenome / Metatranscriptome | 217 | N |
| F025390 | Metagenome / Metatranscriptome | 202 | N |
| F036429 | Metagenome / Metatranscriptome | 170 | N |
| F041255 | Metagenome / Metatranscriptome | 160 | Y |
| F047716 | Metagenome | 149 | Y |
| F049698 | Metagenome | 146 | Y |
| F058080 | Metagenome / Metatranscriptome | 135 | N |
| F061912 | Metagenome | 131 | Y |
| F063776 | Metagenome / Metatranscriptome | 129 | N |
| F078927 | Metagenome / Metatranscriptome | 116 | Y |
| F087320 | Metagenome / Metatranscriptome | 110 | Y |
| F101297 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI24527J20359_1004011 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1102 | Open in IMG/M |
| JGI24527J20359_1004329 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1014 | Open in IMG/M |
| JGI24527J20359_1004693 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 924 | Open in IMG/M |
| JGI24527J20359_1004798 | Not Available | 903 | Open in IMG/M |
| JGI24527J20359_1005167 | Not Available | 832 | Open in IMG/M |
| JGI24527J20359_1005503 | Not Available | 775 | Open in IMG/M |
| JGI24527J20359_1006030 | Not Available | 710 | Open in IMG/M |
| JGI24527J20359_1006122 | Not Available | 700 | Open in IMG/M |
| JGI24527J20359_1006247 | Not Available | 687 | Open in IMG/M |
| JGI24527J20359_1006352 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 676 | Open in IMG/M |
| JGI24527J20359_1006565 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 655 | Open in IMG/M |
| JGI24527J20359_1006834 | Not Available | 629 | Open in IMG/M |
| JGI24527J20359_1006857 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 628 | Open in IMG/M |
| JGI24527J20359_1007169 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. | 604 | Open in IMG/M |
| JGI24527J20359_1007634 | Not Available | 571 | Open in IMG/M |
| JGI24527J20359_1007713 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 566 | Open in IMG/M |
| JGI24527J20359_1007800 | Not Available | 561 | Open in IMG/M |
| JGI24527J20359_1007904 | Not Available | 556 | Open in IMG/M |
| JGI24527J20359_1008049 | Not Available | 549 | Open in IMG/M |
| JGI24527J20359_1008410 | Not Available | 529 | Open in IMG/M |
| JGI24527J20359_1008632 | Not Available | 520 | Open in IMG/M |
| JGI24527J20359_1008716 | Not Available | 516 | Open in IMG/M |
| JGI24527J20359_1008795 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | 512 | Open in IMG/M |
| JGI24527J20359_1008825 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI24527J20359_1004011 | JGI24527J20359_10040112 | F009754 | RMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYDLLMEMKIMYESKGILTNDLYTDYVQTVQQR* |
| JGI24527J20359_1004329 | JGI24527J20359_10043291 | F007802 | MTTHFSNGVTNVRGKANGTSLFSGIKQPLITGGTSPQEWAFQDDFVQFSQTTLAPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYTDYVQTVQQR* |
| JGI24527J20359_1004693 | JGI24527J20359_10046933 | F101297 | GYEIDKAVAITVNTDDIMTAGQGYLYIEWLQKINGTN* |
| JGI24527J20359_1004798 | JGI24527J20359_10047981 | F021806 | MTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTSTQGGGYDFLGQTSFMDDFYSAITRTNTSNNGRGSPGWYLSQTASTQTAAPIADAVGGWLQLDEVNATNDAYNQINTFTAFQLNTGMNAGFEARVAVEDVSTTEMVIGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSDALVDPYTGDTFVIEDGALQAASATQLATPSNSFIAGFNIVPKGSNGNVDRKS |
| JGI24527J20359_1005167 | JGI24527J20359_10051672 | F002274 | MAKTEVGYPEGGKKYKGPTDNVGQDPRANIVTNAFVPGQKIDKGTKVTVQGTGAML |
| JGI24527J20359_1005503 | JGI24527J20359_10055032 | F017046 | MNKMKEIIKEGWDVFPPWLLALNIFAIAIGLAVILFV* |
| JGI24527J20359_1006030 | JGI24527J20359_10060301 | F025390 | VTSTQGGGYDFLGQTSFFDDFYDIITRSNTSSNGTGGSPGWYVAQTSAGNQVLTPTNLAHGGWLKMDETVGTNDAVNQLSTFTNFQLSTLMNSAFECRLTVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLP |
| JGI24527J20359_1006122 | JGI24527J20359_10061221 | F041255 | MXXVXXVKAKFFEPDGVDNDQVSATGTATTLVIADGGPYGNLTETITLTSSADNSGITF |
| JGI24527J20359_1006247 | JGI24527J20359_10062471 | F000479 | MTKAVNILEVLEKAHQGRNMSKKAKMQIADAYGRALVMQKIIADFIKVNRELLIDMGISENANLLHGKDYSLHISQKIGAKIDTALVKEKLGELEYQXCKVPTQYKTIQAMPLNDNQVEVDSSNSIQTISDFKLAV* |
| JGI24527J20359_1006352 | JGI24527J20359_10063522 | F047716 | NTYAQALQNQMATQNQMAMNYPMQRIGQAANIFGTTAGQVPGAPVTPFQGSPTYAGIGAFGNLQSLMGARA* |
| JGI24527J20359_1006565 | JGI24527J20359_10065651 | F012282 | TSATDVKFFVITNPDQTYYIQCSLTLSAAEAAICKNYPVTVSSTASSGSTVTGQSSYYLLAAGGLETELTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA* |
| JGI24527J20359_1006834 | JGI24527J20359_10068342 | F058080 | MNDDEWMYHNPDVWTKVLDDQENAQSWAHQQQLEEQQMAFEHKEGRGSGWSNRSDNPKAPKLNGSMKWKGETINWAIWKNDKKKDTDPDWGIKLEEPREQSYTAGPKAGSFVPEPKRE |
| JGI24527J20359_1006857 | JGI24527J20359_10068572 | F087320 | MVERCLAGLGTNDGAKEIMFHGLVKRLAKYTQLIRRLVNIKNELHIRGDL* |
| JGI24527J20359_1006899 | JGI24527J20359_10068992 | F036429 | KLRVWMDTIAVGTGDLDDDDVIILGQVPSNAKIVSLRIYNDDLNSGSGTHNLGLYNGPQAYTISGTTVAAGAVIDEDCYATDSTAFRAATTTATGAEEQLIEVRNINTIANFVWEDGGISEDPKVPLRIAVTMSATGTAVAGDITLVCLYTVD* |
| JGI24527J20359_1007169 | JGI24527J20359_10071691 | F063776 | IKRRRGNMFLYALKKKYEADIAEHTSVVDTYLKNPVGIPDHDNILETIKNRYDKLTISTLALKSINDLLDKAQEAEKKNKK* |
| JGI24527J20359_1007634 | JGI24527J20359_10076342 | F003082 | TTLFRSSAREKRNKKIKWMKYLVSCIIIGLLFLFSVGCNGVKHVISIEEPTDHTQGDDGGKLKYKIIFGDVNQKE* |
| JGI24527J20359_1007713 | JGI24527J20359_10077131 | F012782 | SLFSGIKQPLITGGDAQEVAYQNDFVVYNASDWDVTSSGSAYQLADYAGGWLRLGDNAPAHTETIGISGKEVWNYNANKKWWYETRIAITDVSDYNFFVGFADNAFVDPSALPVNCIGFSHLEATTTIQFLSRKDSAGTSFTMLENGSTFTMLDSTVATQDATTFEMPSNSVRLGFLFQPLGSERGQT |
| JGI24527J20359_1007800 | JGI24527J20359_10078001 | F008888 | MTIEKQAPLGKSKKIGIPSQNLIVDPRGKTSIRGRSARIATGDKVTVKGTGAARKQT |
| JGI24527J20359_1007904 | JGI24527J20359_10079041 | F049698 | AFFLKKNRRKNPIAKDLSDGRYHQRVVKDKTKYSRKEKHGQTDRHYEHSDSSEAST* |
| JGI24527J20359_1008049 | JGI24527J20359_10080491 | F061912 | MSKTNELKLYQRDWFEKEITEKLTPEIEREELKIKTTVNKLLDKGIKSFSKSIGADKVIARLEKAEGEKREASRLAYTFFNDKASSVVSYSKAKEYKFDRDEKDKISVDDCTGQLEKWAEKQAEQFAETTPQGQRLTY |
| JGI24527J20359_1008410 | JGI24527J20359_10084101 | F018194 | ALPIFAPCDNLALDFFVISYIIVDNTNNNRCNMAKDERLKLYERDHFDEKVDKKLEPVIEVEELRIKATVQTILNKGTKTFAKNIGADKVINALQDAEDRLKKASRNAYIFFDQSARKQVAWSKLKEYKFDRDEKDKISVKDCEDQLEKWAEAQAKQLAEKTPQGQRLSFLKAVKE |
| JGI24527J20359_1008632 | JGI24527J20359_10086321 | F004879 | TTVNXILDKGXKSFSKTIGADKVIARLEKAEDEKREASRLAYTFFNNKASSIVSYSKAKDYKFDRDEKNSISVKDCISQLEKWAEKQAEQYAETTEQGKRLSYLKALQTKAKDMVAEASVSDDLKSSLDNLFAFVGVTWEQKLPALPKPKK* |
| JGI24527J20359_1008716 | JGI24527J20359_10087161 | F078927 | MANVDKAFGLNPYKGNSAGSSVQIVNKYNISTAGYGTSIYQGDLTIFASGFINSAGVSSANIVGAFSHCYYVATDGT |
| JGI24527J20359_1008795 | JGI24527J20359_10087951 | F002506 | EVTTTKQTSVSNVDISPIISEVIEYTKDQATITDIKSAIASVPKANSMDWKLVSGVIMNSLVEWVVENKDNDNTKSLELIQHLQKDIGYLLKRLGLAQ* |
| JGI24527J20359_1008825 | JGI24527J20359_10088251 | F005094 | MGRSVNSFTSFVGHAEETISDDRVTLPEKDLWVAVLCRAVLDACKGPPELDMTRQANIPHKNLYGYNRRAARHFFL |
| ⦗Top⦘ |