NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002165

3300002165: Marine viral communities from the Subarctic Pacific Ocean - LP-52



Overview

Basic Information
IMG/M Taxon OID3300002165 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067852 | Gp0056827 | Ga0006069
Sample NameMarine viral communities from the Subarctic Pacific Ocean - LP-52
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39994156
Sequencing Scaffolds24
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available15
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED101

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9996Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000479Metagenome / Metatranscriptome1092Y
F002274Metagenome / Metatranscriptome576Y
F002506Metagenome553Y
F003082Metagenome / Metatranscriptome508Y
F004879Metagenome / Metatranscriptome420Y
F005094Metagenome412Y
F007802Metagenome / Metatranscriptome344Y
F008888Metagenome / Metatranscriptome326Y
F009754Metagenome / Metatranscriptome313Y
F012282Metagenome / Metatranscriptome282Y
F012782Metagenome / Metatranscriptome277Y
F017046Metagenome / Metatranscriptome243Y
F018194Metagenome / Metatranscriptome236N
F021806Metagenome / Metatranscriptome217N
F025390Metagenome / Metatranscriptome202N
F036429Metagenome / Metatranscriptome170N
F041255Metagenome / Metatranscriptome160Y
F047716Metagenome149Y
F049698Metagenome146Y
F058080Metagenome / Metatranscriptome135N
F061912Metagenome131Y
F063776Metagenome / Metatranscriptome129N
F078927Metagenome / Metatranscriptome116Y
F087320Metagenome / Metatranscriptome110Y
F101297Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24527J20359_1004011All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1102Open in IMG/M
JGI24527J20359_1004329All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1014Open in IMG/M
JGI24527J20359_1004693All Organisms → cellular organisms → Bacteria → Proteobacteria924Open in IMG/M
JGI24527J20359_1004798Not Available903Open in IMG/M
JGI24527J20359_1005167Not Available832Open in IMG/M
JGI24527J20359_1005503Not Available775Open in IMG/M
JGI24527J20359_1006030Not Available710Open in IMG/M
JGI24527J20359_1006122Not Available700Open in IMG/M
JGI24527J20359_1006247Not Available687Open in IMG/M
JGI24527J20359_1006352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203676Open in IMG/M
JGI24527J20359_1006565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium655Open in IMG/M
JGI24527J20359_1006834Not Available629Open in IMG/M
JGI24527J20359_1006857All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria628Open in IMG/M
JGI24527J20359_1007169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.604Open in IMG/M
JGI24527J20359_1007634Not Available571Open in IMG/M
JGI24527J20359_1007713All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium566Open in IMG/M
JGI24527J20359_1007800Not Available561Open in IMG/M
JGI24527J20359_1007904Not Available556Open in IMG/M
JGI24527J20359_1008049Not Available549Open in IMG/M
JGI24527J20359_1008410Not Available529Open in IMG/M
JGI24527J20359_1008632Not Available520Open in IMG/M
JGI24527J20359_1008716Not Available516Open in IMG/M
JGI24527J20359_1008795All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10512Open in IMG/M
JGI24527J20359_1008825Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24527J20359_1004011JGI24527J20359_10040112F009754RMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYDLLMEMKIMYESKGILTNDLYTDYVQTVQQR*
JGI24527J20359_1004329JGI24527J20359_10043291F007802MTTHFSNGVTNVRGKANGTSLFSGIKQPLITGGTSPQEWAFQDDFVQFSQTTLAPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYHSQKAWYFETSIAVTDVTELNTFVGFAANAYANPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYTDYVQTVQQR*
JGI24527J20359_1004693JGI24527J20359_10046933F101297GYEIDKAVAITVNTDDIMTAGQGYLYIEWLQKINGTN*
JGI24527J20359_1004798JGI24527J20359_10047981F021806MTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTSTQGGGYDFLGQTSFMDDFYSAITRTNTSNNGRGSPGWYLSQTASTQTAAPIADAVGGWLQLDEVNATNDAYNQINTFTAFQLNTGMNAGFEARVAVEDVSTTEMVIGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSDALVDPYTGDTFVIEDGALQAASATQLATPSNSFIAGFNIVPKGSNGNVDRKS
JGI24527J20359_1005167JGI24527J20359_10051672F002274MAKTEVGYPEGGKKYKGPTDNVGQDPRANIVTNAFVPGQKIDKGTKVTVQGTGAML
JGI24527J20359_1005503JGI24527J20359_10055032F017046MNKMKEIIKEGWDVFPPWLLALNIFAIAIGLAVILFV*
JGI24527J20359_1006030JGI24527J20359_10060301F025390VTSTQGGGYDFLGQTSFFDDFYDIITRSNTSSNGTGGSPGWYVAQTSAGNQVLTPTNLAHGGWLKMDETVGTNDAVNQLSTFTNFQLSTLMNSAFECRLTVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLP
JGI24527J20359_1006122JGI24527J20359_10061221F041255MXXVXXVKAKFFEPDGVDNDQVSATGTATTLVIADGGPYGNLTETITLTSSADNSGITF
JGI24527J20359_1006247JGI24527J20359_10062471F000479MTKAVNILEVLEKAHQGRNMSKKAKMQIADAYGRALVMQKIIADFIKVNRELLIDMGISENANLLHGKDYSLHISQKIGAKIDTALVKEKLGELEYQXCKVPTQYKTIQAMPLNDNQVEVDSSNSIQTISDFKLAV*
JGI24527J20359_1006352JGI24527J20359_10063522F047716NTYAQALQNQMATQNQMAMNYPMQRIGQAANIFGTTAGQVPGAPVTPFQGSPTYAGIGAFGNLQSLMGARA*
JGI24527J20359_1006565JGI24527J20359_10065651F012282TSATDVKFFVITNPDQTYYIQCSLTLSAAEAAICKNYPVTVSSTASSGSTVTGQSSYYLLAAGGLETELTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
JGI24527J20359_1006834JGI24527J20359_10068342F058080MNDDEWMYHNPDVWTKVLDDQENAQSWAHQQQLEEQQMAFEHKEGRGSGWSNRSDNPKAPKLNGSMKWKGETINWAIWKNDKKKDTDPDWGIKLEEPREQSYTAGPKAGSFVPEPKRE
JGI24527J20359_1006857JGI24527J20359_10068572F087320MVERCLAGLGTNDGAKEIMFHGLVKRLAKYTQLIRRLVNIKNELHIRGDL*
JGI24527J20359_1006899JGI24527J20359_10068992F036429KLRVWMDTIAVGTGDLDDDDVIILGQVPSNAKIVSLRIYNDDLNSGSGTHNLGLYNGPQAYTISGTTVAAGAVIDEDCYATDSTAFRAATTTATGAEEQLIEVRNINTIANFVWEDGGISEDPKVPLRIAVTMSATGTAVAGDITLVCLYTVD*
JGI24527J20359_1007169JGI24527J20359_10071691F063776IKRRRGNMFLYALKKKYEADIAEHTSVVDTYLKNPVGIPDHDNILETIKNRYDKLTISTLALKSINDLLDKAQEAEKKNKK*
JGI24527J20359_1007634JGI24527J20359_10076342F003082TTLFRSSAREKRNKKIKWMKYLVSCIIIGLLFLFSVGCNGVKHVISIEEPTDHTQGDDGGKLKYKIIFGDVNQKE*
JGI24527J20359_1007713JGI24527J20359_10077131F012782SLFSGIKQPLITGGDAQEVAYQNDFVVYNASDWDVTSSGSAYQLADYAGGWLRLGDNAPAHTETIGISGKEVWNYNANKKWWYETRIAITDVSDYNFFVGFADNAFVDPSALPVNCIGFSHLEATTTIQFLSRKDSAGTSFTMLENGSTFTMLDSTVATQDATTFEMPSNSVRLGFLFQPLGSERGQT
JGI24527J20359_1007800JGI24527J20359_10078001F008888MTIEKQAPLGKSKKIGIPSQNLIVDPRGKTSIRGRSARIATGDKVTVKGTGAARKQT
JGI24527J20359_1007904JGI24527J20359_10079041F049698AFFLKKNRRKNPIAKDLSDGRYHQRVVKDKTKYSRKEKHGQTDRHYEHSDSSEAST*
JGI24527J20359_1008049JGI24527J20359_10080491F061912MSKTNELKLYQRDWFEKEITEKLTPEIEREELKIKTTVNKLLDKGIKSFSKSIGADKVIARLEKAEGEKREASRLAYTFFNDKASSVVSYSKAKEYKFDRDEKDKISVDDCTGQLEKWAEKQAEQFAETTPQGQRLTY
JGI24527J20359_1008410JGI24527J20359_10084101F018194ALPIFAPCDNLALDFFVISYIIVDNTNNNRCNMAKDERLKLYERDHFDEKVDKKLEPVIEVEELRIKATVQTILNKGTKTFAKNIGADKVINALQDAEDRLKKASRNAYIFFDQSARKQVAWSKLKEYKFDRDEKDKISVKDCEDQLEKWAEAQAKQLAEKTPQGQRLSFLKAVKE
JGI24527J20359_1008632JGI24527J20359_10086321F004879TTVNXILDKGXKSFSKTIGADKVIARLEKAEDEKREASRLAYTFFNNKASSIVSYSKAKDYKFDRDEKNSISVKDCISQLEKWAEKQAEQYAETTEQGKRLSYLKALQTKAKDMVAEASVSDDLKSSLDNLFAFVGVTWEQKLPALPKPKK*
JGI24527J20359_1008716JGI24527J20359_10087161F078927MANVDKAFGLNPYKGNSAGSSVQIVNKYNISTAGYGTSIYQGDLTIFASGFINSAGVSSANIVGAFSHCYYVATDGT
JGI24527J20359_1008795JGI24527J20359_10087951F002506EVTTTKQTSVSNVDISPIISEVIEYTKDQATITDIKSAIASVPKANSMDWKLVSGVIMNSLVEWVVENKDNDNTKSLELIQHLQKDIGYLLKRLGLAQ*
JGI24527J20359_1008825JGI24527J20359_10088251F005094MGRSVNSFTSFVGHAEETISDDRVTLPEKDLWVAVLCRAVLDACKGPPELDMTRQANIPHKNLYGYNRRAARHFFL

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