3300002150: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by bead beating

Overview

Basic Information

• IMG/M Taxon OID: 3300002150
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099546 | Gp0055080 | Ga0005347
• Sample Name: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by bead beating
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 214938064
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Gulf of Piran, Adriatic Sea
• Coordinates
  • Lat. (^o): 45.5099
  • Long. (^o): 13.56
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F020116	Metagenome / Metatranscriptome	226	Y
F105953	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24792J26632_1005602	All Organisms → cellular organisms → Bacteria → Proteobacteria	5131
JGI24792J26632_1065629	All Organisms → cellular organisms → Bacteria	568

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24792J26632_1005602	JGI24792J26632_10056024	F004237	MIDYDIADMMDGVKNMIEASDIRPGDQVLLLADRRSDSASMEAISAGLKFMGAEPMSLITEPISRYGRVPQAVLDAMHACDVVIWVWPVFITFTPGHRALGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGGGKADGEVYLSCVQGVAGELPAPMKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRLVEIMFGYHPKASIQHGIADPMHWELISKMPWVGLGTDRKNPDFRHVDGSVMNARLYIDERLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHNAHGSGTLW*
JGI24792J26632_1007700	JGI24792J26632_10077001	F105953	EPLHVAKGYPAKDERTTAAECLLLKPSEVLEQVEEGLSGGQHFELIENEDLMVEMTVRSDSQRIYHRGFNQDEVAFQLTGQRGTRTTQGEFMLDTGDMLWIPPGCSHRNIGDMLTTRIILYTRNPLTLSREYTSRAEQVGQAG*
JGI24792J26632_1065629	JGI24792J26632_10656292	F020116	MSGVGTTHEDLEKYLAGHHLTGAGLRREGMAPPRTGATGAHWRWQGIYQGLLRSGEIVTVGPGGMTGMRSVTGIEATRFPIWMNVQILMPGERTQGHRNMR