Sample 3300002130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300002130

3300002130: Wastewater microbial communities from Belvaux, Luxembourg - M48

Overview

Basic Information
IMG/M Taxon OID	3300002130 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099419 \| Gp0056173 \| Ga0016766
Sample Name	Wastewater microbial communities from Belvaux, Luxembourg - M48
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31457622
Sequencing Scaffolds	10
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
Methanogenium → unclassified Methanogenium → Methanogenium sp. MK-MG	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Microbial Communities From Belvaux, Luxembourg
Type	Engineered
Taxonomy	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Belvaux, Luxembourg
Coordinates	Lat. (^o)	49.506095	Long. (^o)	5.943536	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021262	Metagenome / Metatranscriptome	219	N
F025288	Metagenome / Metatranscriptome	202	N
F031475	Metagenome / Metatranscriptome	182	N
F033857	Metagenome / Metatranscriptome	176	Y
F037272	Metagenome / Metatranscriptome	168	Y
F047964	Metagenome / Metatranscriptome	149	N
F048287	Metagenome / Metatranscriptome	148	N
F049316	Metagenome / Metatranscriptome	147	N
F055749	Metagenome / Metatranscriptome	138	N
F084270	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
CSTRM48_1000080	All Organisms → cellular organisms → Bacteria	2837	Open in IMG/M
CSTRM48_1000091	All Organisms → cellular organisms → Bacteria	18729	Open in IMG/M
CSTRM48_1000702	Not Available	1338	Open in IMG/M
CSTRM48_1000749	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	2635	Open in IMG/M
CSTRM48_1001210	Methanogenium → unclassified Methanogenium → Methanogenium sp. MK-MG	4796	Open in IMG/M
CSTRM48_1001293	All Organisms → Viruses → Predicted Viral	1519	Open in IMG/M
CSTRM48_1001872	Not Available	4371	Open in IMG/M
CSTRM48_1002310	Not Available	1806	Open in IMG/M
CSTRM48_1002314	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
CSTRM48_1006116	All Organisms → cellular organisms → Bacteria	3176	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
CSTRM48_1000080	CSTRM48_10000805	F048287	MLDTLKLMLSEYKVSPESSLRVQPASYEVATGEKVEFPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYFSVGEAGTRASLKKVEGELAENGVLTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHGEETSELPETMRFEHRALTKRKVSSLYGFTRAGELFHGGYEVVREKQLESWKSSLFSFSAEEVVVLGSKQLEQEMRFFQEKFGANWFQYFLKSYGAYSLAKFAGKEVVRNALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTRM48_1000091	CSTRM48_100009115	F084270	MPRQTNEKNLIFPDGFKLEISTDGTTGSAWKDVGVLAGGANLTFNWDEFYLDAGNYEGLVDKAINPTVALAPSAVWNWDPAVIKALFPGFFTSAAATSPETGTDITYAGTSNQVSLTRSKLRLTHYTDDALTTVDWQFTLHNAKIDAGASFNFKGVNEDGLDEITVSFTGKPDPASTYALFTFFKAS*
CSTRM48_1000702	CSTRM48_10007021	F047964	MVSKKEMLVILNKVAAVFGKEIDEKLVSVYHLALKQYSRMALADAAMLCVQENSFMPRPKDLVEKIDKYDLERKWQVVEPSTERTYWVLFREEYETTDDINEIECKEIFADEYVGAPKLKKTSETNNMSDEERLIQFRKLYKEQKQYV*
CSTRM48_1000749	CSTRM48_10007495	F055749	MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPTLDADSDWNTTTNPDLPSGASMWSQLGPLLVLAVLALVIGLVIMYFRNAAG*
CSTRM48_1001210	CSTRM48_10012103	F033857	MVVIHDLSTLSPEPVIVRIGNGDEIEEIDLTIVPARGTLLLSEATQRHGGWDKIPDDEMIPAIAAICRQSNPRITAEWLETKLTRPQLAGLTQVILAQAFRPWGNQKKDDKEQDAGEKNR
CSTRM48_1001293	CSTRM48_10012932	F047964	MVSKKEMLVILNKVAAVFGKEIDEKLVSVYHLALKQYPRMALADAAMLCVQENSFMPRPKDLVEKIDKYDLERKWQVVEPSTERTYWVLFREEYETTDDINEIECKEIFADEYVGAPKLKKTSETNNMSDEERLIQFRKLYEEQKQHV*
CSTRM48_1001872	CSTRM48_10018726	F037272	MTGKQIMRIHTANGVEDIDADRLLVQGDEYILFRGEEEVRRVKIADIVIATDPETGEEAGGIETVYSRS*
CSTRM48_1002310	CSTRM48_10023103	F021262	MSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRKYARLVAKSYEMSTGLKLRTWTYNSFMKSLGKSLMVMEFKEMK*
CSTRM48_1002310	CSTRM48_10023104	F049316	MDKDKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEYLDKLYWQYKIDNPHIFAAVQFGNLSNAAVMIAEAIKQLPQEPEAQKLIDEGMRLISILSK*
CSTRM48_1002314	CSTRM48_10023141	F021262	TGKELTGTAKEIVTQLRNESRLLAITPRKYARLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMVMEFKEMK*
CSTRM48_1006116	CSTRM48_10061161	F031475	MDANTADGSRDPLCANPQQQREKLTQLDFLTLEMMGISIEELRELLDEEELQAYFAFLRRQSSDLD
CSTRM48_1006116	CSTRM48_10061162	F025288	MKNKWIWITVSVILLLGLIAGAGALGYQMGLRNANALALRGDDNPSSPRQQIPGMRDGMIIRRPAAFIGYFFLFPLRLLLGLAALLLVVWLVVKVAKAAWNGGDHKPKPAEAAVSPAATETVITEAPVSSSEPTSTPESDQK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.