3300002095: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3

Overview

Basic Information

• IMG/M Taxon OID: 3300002095
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055715 | Ga0005089
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73108706
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, USA
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050966	Metagenome / Metatranscriptome	144	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26659_1003241	Not Available	1994
C687J26659_1007484	Not Available	1266
C687J26659_1014075	Not Available	876

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26659_1003241	C687J26659_10032411	F050966	MSGSMWQGMKTRHGDGTEALSEEMESNGSATPKSRRHP
C687J26659_1007484	C687J26659_10074841	F100657	IYMIYFINSHKEIMIMTQITISYTTSVXTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL*
C687J26659_1014075	C687J26659_10140751	F050966	MRENLMSGSRWQGMKTRHGDGTEALSEEMESNGSATPK