3300002093: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1

Overview

Basic Information

• IMG/M Taxon OID: 3300002093
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055685 | Ga0005087
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129080705
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pseudomonas phage phiK7A1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071896	Metagenome / Metatranscriptome	121	N
F091594	Metagenome / Metatranscriptome	107	Y
F094884	Metagenome / Metatranscriptome	105	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26627_1000189	All Organisms → cellular organisms → Bacteria	27578
C687J26627_1000583	Not Available	11085
C687J26627_1005424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2534
C687J26627_1033053	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pseudomonas phage phiK7A1	706
C687J26627_1036776	Not Available	655

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26627_1000189	C687J26627_100018971	F100657	MTQITISYTTSVFTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL*
C687J26627_1000583	C687J26627_10005836	F094884	MPKDKLIGTAYVNIIKDEKGQVKFAYGYELDDNAVSLNDLGMLNSFLGKLKNKAQEDFNERLDINDKEFSIEKDGVEEDEGN*
C687J26627_1005424	C687J26627_10054244	F091594	MSENGITHYCLGNGECGGCQQEKNWQTLNQMPDALRKPLQAQAQRIDDTDCILAGRPWRVGA*
C687J26627_1033053	C687J26627_10330531	F100657	VFTPAGWRNETVTATLELISPKRGRVLCVTDIGGNGTSGYGSRTGAKRQRYHVGGVAMREEGKIKNLSACCVL*
C687J26627_1036776	C687J26627_10367762	F071896	INNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFNSLAILNLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQEKNKK*