3300002089: Soil microbial communities from Manhattan, Kansas, USA - Sample 100um emPCR

Overview

Basic Information

• IMG/M Taxon OID: 3300002089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099547 | Gp0055128 | Ga0005636
• Sample Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 100um emPCR
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2068208
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082835	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24810J26611_10023	All Organisms → cellular organisms → Bacteria	9029

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24810J26611_10023	JGI24810J26611_100232	F082835	MKTVNTLFVVIILLGSCSSPKKTAPKRNLPTVTHADELKGGTSFSNPIVIMMQSEREVLDEEYKWLSINYPGYSLMRRTHKLRLSKHYDIVRIKTNQGRLRDIYFDSTHFWGKK*