3300002079: CSTRmetagenomics

Overview

Basic Information

• IMG/M Taxon OID: 3300002079
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095583 | Gp0060320 | Ga0016756
• Sample Name: CSTRmetagenomics
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89693915
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium 34_109	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Plant Microbial Communities From Luxembourg
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater Treatment Plant → Wastewater Treatment Plant Microbial Communities From Luxembourg

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Belvaux, Luxembourg
• Coordinates
  • Lat. (^o): 49.507864
  • Long. (^o): 5.943557
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011593	Metagenome / Metatranscriptome	289	Y
F021489	Metagenome / Metatranscriptome	218	N
F023356	Metagenome / Metatranscriptome	210	Y
F029455	Metagenome / Metatranscriptome	188	Y
F030486	Metagenome / Metatranscriptome	185	Y
F045118	Metagenome / Metatranscriptome	153	N
F047964	Metagenome / Metatranscriptome	149	N
F048287	Metagenome / Metatranscriptome	148	N
F049316	Metagenome / Metatranscriptome	147	N
F064732	Metagenome / Metatranscriptome	128	Y
F066555	Metagenome / Metatranscriptome	126	Y
F073245	Metagenome / Metatranscriptome	120	Y
F078878	Metagenome / Metatranscriptome	116	Y
F104682	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
CSTR_1009099	Not Available	1357
CSTR_1009267	All Organisms → cellular organisms → Bacteria	1075
CSTR_1019028	All Organisms → Viruses → Predicted Viral	1156
CSTR_1019064	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6454
CSTR_1022109	All Organisms → cellular organisms → Bacteria	2470
CSTR_1022359	All Organisms → cellular organisms → Bacteria	1044
CSTR_1022360	All Organisms → cellular organisms → Bacteria	1119
CSTR_1022430	All Organisms → cellular organisms → Bacteria	2967
CSTR_1022636	All Organisms → cellular organisms → Bacteria	8854
CSTR_1024451	All Organisms → cellular organisms → Bacteria	1352
CSTR_1025975	All Organisms → cellular organisms → Bacteria	1309
CSTR_1026402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium 34_109	1574
CSTR_1028711	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	7400
CSTR_1028770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1270
CSTR_1030708	Not Available	1035

Sequences

Scaffold ID	Protein ID	Family	Sequence
CSTR_1008147	CSTR_10081472	F078878	LSSIVLKIPYESQSFHAALTDATLRDRVQEWVAAAVTLDDAVYIPLRTDWMPNGPRRTADGVEVLLAGRWPPEVDAETGPRVSAAIFGRVWDTLCNATPADELEDIATCGLSGVNEEQTGNEVLEEAPAVIHIHATPVNHVDGW
CSTR_1009099	CSTR_10090992	F064732	MPKVSEYKWKDTEAEAEAATAAARERCTMPLVQSAERHVRFPSSPMAPGQYIAATATRSTGQLDHPEDTELGNHPFLGLL*
CSTR_1009267	CSTR_10092672	F011593	MTSSLAAPPWCRGCPDPIYDNRRGEWDWYCRQHSPTGIRCSNVAVLRERCYRVREYFAKKEASK*
CSTR_1019028	CSTR_10190282	F066555	MKGKLRKEFIERMEAVLYGDIVEEEVEDLIHDFCDEIENRLLDVCAELKRIKGLREIDAIRNAVEELVTDLW*
CSTR_1019064	CSTR_10190648	F030486	RYVALAQSRGGACFCTRGAVQDYAVITLFSRWQKP*
CSTR_1022109	CSTR_10221092	F023356	MSENSLKKAVLESRVSAAEAEVMSTELEKSKVITLRVEEPLFKAIEAQAELWNVKPAETIRRVLRFYFLPVALELELRGESEKFWKGEFTPEAVGEYMVFLLETTEKIRSSALFLSREAVKLSEATEGKLSEALEEEREGAET*
CSTR_1022109	CSTR_10221093	F048287	MYNKAVLLQTLQQVRLKVIDTLKLMLSDYEVSPESSLRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGTRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARRAQQRGYGTTFLVSNSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTSVSELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKVFQERFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022359	CSTR_10223593	F045118	AELSRVDTFKNIEPEEPFSSYFSLFSLLRARRAQQRGYGTTFLLSNSSQEFCIYDKLQEMREHGEETSELPETMRFEHRALKKEKVSSLYGFTKVKELFHGGYEVVKEKQVESWKNSLFSFSAEEVLVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCGTAERN*
CSTR_1022360	CSTR_10223601	F045118	AGTRAALKKVEGELDQSGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHDLETSNLPETMRFEHRALKKEKVRSLYGFTRVSELFHGGYEVVKEKQVESWKNSLFSFSTEEVVVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022430	CSTR_10224307	F048287	KVEFPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYFSVGEAGTRASLKKVEGELAENGVLTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHGEETSELPETMRFEHRALTKRKVSSLYGFTRAGELFHGGYEVVREKQLESWKSSLFSFSAEEVVVLGSKQLEQEMRFFQEKFGANWFQYFLKSYGAYSLAKFAGKEVVRNALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022636	CSTR_10226361	F029455	ARGSMADRVIDLDLWGEGAERLPAITITGQGLRIEGSQAEFDRLILIIGGWMK*
CSTR_1024451	CSTR_10244512	F073245	MIAEPITLLDLALGLTLLIALVAIVVNVIALVKEYIKSQNVRA*
CSTR_1025975	CSTR_10259753	F045118	FSLFSLLKARRAQQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRTLYGFTRVNELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRSALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1026402	CSTR_10264021	F021489	MTIEKKIESVQEYNLLKLLKANSSLKRFGVEWIKLDHTLCRAFATNEFAMIVADLEPNQWHDIFDGLPEVIFIDKLKRDEVHYFEAKELVYYNYLSVFEAVGKEPNYQPVMHFDLELLRNLTDKFDNIYFVKQSGKALFMKLEGDKYPAGSYYGALMPKTISQEETAKIIEALSSLATDGEIRRQWVADLREFAQE*
CSTR_1028711	CSTR_10287116	F104682	MREIGIDRPRFDVKVSTEIFTLYFIPNLARKKYIDFWHRVEQMIEALKIADAKERKQAVDSLSTDDESDLLKEIIEVTLEANGIAYNETWWEEHTDAEMQLEFVRSVIEGSDNGKKKVLQVLKA*
CSTR_1028770	CSTR_10287702	F047964	MVSKKEMLVILNKVAAVFGKEIDEKLVSVYHLALKQYSRMALADAAMLCVQENSFMPRPKDLVEKIDKYDLERKWQVVEPSTERTYWVLFREEYETTDDINEIECKEIFADEYVGAPKLKKTSETNNMSDEERLIQFRKLY
CSTR_1030708	CSTR_10307081	F049316	MDKDKRITTIVLDKEADRKSKIIAEFTGKSLSAIYREALDMYFSHFVNNDLLSEVNEYLDKLYWQYKIDNPHIFAAVQFGNLSNAAVMIAEAIKQLPQEPEAQKLIDEGMRLISVLSK*