3300002056: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-A4

Overview

Basic Information

• IMG/M Taxon OID: 3300002056
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085351 | Gp0061077 | Ga0016750
• Sample Name: Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-A4
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 177665328
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Macroalgal Surface Microbial Communities
• Type: Host-Associated
• Taxonomy: Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Botany Bay, Sydney, NSW, Australia
• Coordinates
  • Lat. (^o): -33.966629
  • Long. (^o): 151.166614
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y
F037503	Metagenome / Metatranscriptome	168	Y
F051159	Metagenome / Metatranscriptome	144	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
AA4_1000039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	192770
AA4_1000182	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	42905
AA4_1001183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8121
AA4_1031967	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	568

Sequences

Scaffold ID	Protein ID	Family	Sequence
AA4_1000039	AA4_100003926	F051159	MENILIVLCILILASAFGGTQLPKLPGAILSLGALFLAMFNGHALDNMASTFFIIPIILVIVGVLSYLAEKRLATEGANASSRDQLLGGSIFQVIFILIVTIYFVSTFFFPHFS*
AA4_1000182	AA4_100018220	F028441	MTLKQLIKLENKAKEVWVVSPTLHYDVDNKDFTEIVSVNLGEKTKYRYIVPASKTVLKNVKLYKKMYNVSEEEVDRNFLFLPESDFNPFITECAIYNASSESVAVAAPATEDSNDVIRFNPQTSAEMTKQFKALWKKYKRRNP*
AA4_1001183	AA4_10011832	F028441	MNKMTLKQLIKLENKSQVIWVVSPSLHYDVENKDFNEIVSVNLGQKAKYRYIVPATPAITKNMKLYQKMYGLTTEEMGNNFLLLPESEFNPFITETAIYDPTGECVACCAPATEDSKDVIKFNQQTAKMMCKSFKSIWKKYKRSNP*
AA4_1031967	AA4_10319671	F037503	GLGGFTAYQPLTNSECREYIPAVRLWVLRSIAERETTQTIS*