3300001928: Marine microbial communities from the Tropical South Pacific Ocean - GS043

Overview

Basic Information

• IMG/M Taxon OID: 3300001928
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055716 | Gp0056505 | Ga0016844
• Sample Name: Marine microbial communities from the Tropical South Pacific Ocean - GS043
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 612652
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Global Ocean Sampling (Gos)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean
• Coordinates
  • Lat. (^o): -7.661111
  • Long. (^o): -116.11916
  • Alt. (m): N/A
  • Depth (m): 1.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004734	Metagenome	426	Y
F005118	Metagenome	411	Y
F043885	Metagenome	155	Y
F088931	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GOS2258_10016	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1538
GOS2258_10051	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	1821
GOS2258_10282	Not Available	1638

Sequences

Scaffold ID	Protein ID	Family	Sequence
GOS2258_10016	GOS2258_100163	F043885	MSSIVYKSGGYVSVPMSENLFWNRVGWLRHAMLTAENFEFRLLYFHKLQDLMKFVP*
GOS2258_10051	GOS2258_100515	F005118	MMNYMMMTMATQTSRAKRLVKLLERLLRKRELFDDEQYKLIKEQLKVAKNELALIEEKTSKGFK*
GOS2258_10052	GOS2258_100522	F088931	MRKFILVANYAIAVIICLVLLAQTQMPIVERAIFGFGAIFVGMGIRRVVKNLMPLDGEN*
GOS2258_10282	GOS2258_102822	F004734	MIKYYTFMVLTYFVQGEPLTYNILFPSYDACSHSKTAMYAITRPYVDDVHIYCKGTHHASNELIKPKPRPEVKK*