3300001923: Marine microbial communities from the Tropical South Pacific Ocean - GS038

Overview

Basic Information

• IMG/M Taxon OID: 3300001923
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055716 | Gp0056501 | Ga0016825
• Sample Name: Marine microbial communities from the Tropical South Pacific Ocean - GS038
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 451181
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Global Ocean Sampling (Gos)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Pacific Ocean
• Coordinates
  • Lat. (^o): -2.5819445
  • Long. (^o): -97.85139
  • Alt. (m): N/A
  • Depth (m): 1.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004453	Metagenome	437	Y
F041243	Metagenome	160	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GOS2253_10115	Not Available	1263
GOS2253_10200	Not Available	893

Sequences

Scaffold ID	Protein ID	Family	Sequence
GOS2253_10115	GOS2253_101152	F041243	MAVDPQQKLEALNSELQQVVNNFNQANQVVENCKQKIFELKGGIAAVEDILKPDETAEEQSE*
GOS2253_10200	GOS2253_102003	F004453	MLIDFTEFELETIAAAMDDYIQYDDENISKEDLIGGLSVSDRVESILTKIDNVIMQ*