3300001852: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM53, ROCA_DNA120_0.2um_25g

Overview

Basic Information

• IMG/M Taxon OID: 3300001852
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056140 | Ga0016848
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM53, ROCA_DNA120_0.2um_25g
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1382658
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 11.3123
  • Long. (^o): -56.4267
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037707	Metagenome / Metatranscriptome	167	N
F044540	Metagenome / Metatranscriptome	154	Y
F063602	Metagenome / Metatranscriptome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM53_10013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	1049
ACM53_10213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181
ACM53_12334	Not Available	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM53_10013	ACM53_100132	F037707	MLMTRYKDLSKRSVNTVIMEKIVDRLASGETLVDITKDKAMPSYRAVTRAVAADEDLWALYRKGRILQAEFYADKINGLAMEPLPEGDVRFLNAEVNRRRLEIDTLKWTTARNQPFGIRDKKEDQPQAQTFTISWSGGDTAINAHEDEEVLH*
ACM53_10213	ACM53_102134	F063602	MKVNIGLAFAMAVQLVALVWYISGLVHDLEHLKQTVSAQDELIRLIDQ
ACM53_12334	ACM53_123341	F044540	MNATIINGATETKADADKLHQGVTDEFNATILTGNNCTSVNVKIKAKKKSIHPKIMQNIPATIKPGIEFGKTTFKNA