| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001824 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0096913 | Gp0056135 | Ga0016828 |
| Sample Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19123216 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 28 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → plume front → planktonic material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Amazon River plume to Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 4.8818 | Long. (o) | -51.3608 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000744 | Metagenome / Metatranscriptome | 909 | Y |
| F000948 | Metagenome / Metatranscriptome | 823 | Y |
| F001971 | Metagenome / Metatranscriptome | 609 | Y |
| F002090 | Metagenome / Metatranscriptome | 595 | Y |
| F002907 | Metagenome / Metatranscriptome | 521 | Y |
| F004898 | Metagenome / Metatranscriptome | 419 | Y |
| F005478 | Metagenome / Metatranscriptome | 399 | Y |
| F011300 | Metagenome / Metatranscriptome | 292 | Y |
| F012436 | Metagenome / Metatranscriptome | 280 | Y |
| F015093 | Metagenome / Metatranscriptome | 257 | Y |
| F016805 | Metagenome / Metatranscriptome | 244 | N |
| F016995 | Metagenome | 243 | Y |
| F018167 | Metagenome | 236 | Y |
| F026012 | Metagenome / Metatranscriptome | 199 | Y |
| F027862 | Metagenome / Metatranscriptome | 193 | Y |
| F030352 | Metagenome / Metatranscriptome | 185 | N |
| F035678 | Metagenome / Metatranscriptome | 171 | Y |
| F038300 | Metagenome / Metatranscriptome | 166 | N |
| F046343 | Metagenome / Metatranscriptome | 151 | Y |
| F051454 | Metagenome | 144 | Y |
| F064623 | Metagenome / Metatranscriptome | 128 | N |
| F066589 | Metagenome / Metatranscriptome | 126 | Y |
| F082390 | Metagenome / Metatranscriptome | 113 | Y |
| F084398 | Metagenome / Metatranscriptome | 112 | N |
| F094809 | Metagenome / Metatranscriptome | 105 | N |
| F095501 | Metagenome / Metatranscriptome | 105 | N |
| F096844 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ACM36_100073 | All Organisms → Viruses | 991 | Open in IMG/M |
| ACM36_100394 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 5120 | Open in IMG/M |
| ACM36_100701 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 529 | Open in IMG/M |
| ACM36_101323 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus | 2457 | Open in IMG/M |
| ACM36_101944 | Not Available | 744 | Open in IMG/M |
| ACM36_102331 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium | 1631 | Open in IMG/M |
| ACM36_102445 | All Organisms → Viruses → Predicted Viral | 1389 | Open in IMG/M |
| ACM36_102619 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E | 4284 | Open in IMG/M |
| ACM36_103620 | All Organisms → Viruses → Predicted Viral | 1083 | Open in IMG/M |
| ACM36_103811 | Not Available | 653 | Open in IMG/M |
| ACM36_104091 | All Organisms → Viruses → Predicted Viral | 1169 | Open in IMG/M |
| ACM36_104166 | Not Available | 762 | Open in IMG/M |
| ACM36_105313 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1582 | Open in IMG/M |
| ACM36_105373 | Not Available | 572 | Open in IMG/M |
| ACM36_106050 | All Organisms → Viruses → Predicted Viral | 1421 | Open in IMG/M |
| ACM36_106628 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 541 | Open in IMG/M |
| ACM36_107655 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 554 | Open in IMG/M |
| ACM36_107709 | Not Available | 577 | Open in IMG/M |
| ACM36_107919 | Not Available | 642 | Open in IMG/M |
| ACM36_108516 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 596 | Open in IMG/M |
| ACM36_108886 | Not Available | 680 | Open in IMG/M |
| ACM36_111144 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 511 | Open in IMG/M |
| ACM36_111272 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 600 | Open in IMG/M |
| ACM36_113374 | Not Available | 576 | Open in IMG/M |
| ACM36_115503 | Not Available | 604 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ACM36_100073 | ACM36_1000732 | F002907 | MTKRNPYWFFQKWGIEEHSPLETLAEKVEQLEERIKLIEQEMVEQSNSLYECWNSLDARIDILSEHKTDV* |
| ACM36_100394 | ACM36_10039416 | F082390 | MVTVNLTEQQLALMEELVGKKFDEVAQAWLPAEETKDMNKLCYDTLLNLRCVRLSKEYDETYANWDKDFYSLDKKLFLKDVGLVTDEELAQQGIC* |
| ACM36_100394 | ACM36_1003948 | F096844 | MKLSPDSVSKIADALKPAIIEHMMNDDNVTQAMQDSVADGIREVMGDMDEDLFFEIGMLLFDRIDIK* |
| ACM36_100701 | ACM36_1007011 | F084398 | MARLELTLNFPKSFQIKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYE |
| ACM36_101323 | ACM36_1013233 | F012436 | KFLYPNDPPDAKCPHCGEKGRPCSHVDSLSRAYCRAACKRKYVDSETNK* |
| ACM36_101944 | ACM36_1019441 | F000744 | MKKGDVSVNLNVHEIGVILSALQLLENIDENRIAREYGSTAALYERLHSVWETLDRSETGLRNDVVPSY |
| ACM36_102331 | ACM36_1023314 | F095501 | MEDGMLVPVIIASVLTLMCVYGVITQKLIFTRHGLFWFGIMVFLANMISAVQTGGTGEAEMIMISTGLLYGLQAVLMYPFITHPFDNSNKAAYFAQKRIAICITSINGVIPVLHLLGFDLGIP |
| ACM36_102445 | ACM36_1024452 | F064623 | MNEEVTVLNSIGGCASSXXXXXXXXXXXXXNRDHFHQGINFGRCKHTLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMAVTHIENKGLPLHPTRTDNVEIHPQTKEIYRVHPQFVKNYTLEEYVRGGQDWFMTYEHIYNWTQRETKYPVLCVKSDVQWKYGKEIFVDFLGQKSVPLEYVQRDRNSTIDLVPENMKEEFTSILKEATELYNSLPEFRVV* |
| ACM36_102619 | ACM36_1026195 | F094809 | LFIPKKILARKCNISLESLDLLLELNAFKEEILVNTYLVTLYGIEEPNYALNTIPWMQIINLASDDDVSFKSDLSFSFVDSSGNNNDPMSLTINPILREIDFWDGYSNNTAEVFKSNLDFKAGVKTYLRKFNKLLKK* |
| ACM36_103620 | ACM36_1036204 | F035678 | MSEEKQYSKYRLDQLAKELGGKWYHQTVSNNRTEYKRIV |
| ACM36_103811 | ACM36_1038111 | F066589 | MEDENLYEKDFDENLPYISMDMGVDDVRQIHESISLHLQNWVSCPEKKERLEGLKDFFERLLLEYTFKIGE* |
| ACM36_104091 | ACM36_1040914 | F046343 | MTLAKTGTEILTKEEIDELNALKEAITYRPASVTTQKMEKFAELMVRSLEGKRSDSPQ* |
| ACM36_104166 | ACM36_1041662 | F012436 | MLLQQLINKFSYPNDPKDAKCPYCGEHGKPCSHVDSLARAYARGACKKKCEGSNK* |
| ACM36_105313 | ACM36_1053132 | F030352 | MRFILSLLILISSCSSGVDTDSIEIASLVLPDNQKRSYSIQCNLLPKQTIRDLEGIIPTFIKNLKESNDFESVYIHFDQLQIEKFFLQFEIANTEESFEEQLLENRFINRQCEGRVGAAKIYRLIDSFAIEPNTPYLIERSLCQFDDEKGYVDLMLAVDKLVLEGMLQNIKINSTVRELPNNSNFEWTNWYPNRTDIESFKNIWIESNLAKEIQQDFKETAACFGSQKYQAYKLI* |
| ACM36_105373 | ACM36_1053732 | F011300 | SWSMVMLLLATMMLGMWLLISSLGSNDADDDDDFGGGMMIPAYNPTN* |
| ACM36_106050 | ACM36_1060502 | F005478 | MYDDYDLDYTFSNDYNLDEDTYYEYYAQCDVDLDEDYAHNTQDYDTLAYRHYA* |
| ACM36_106628 | ACM36_1066281 | F016805 | VDPFLTPLVTAAIIAGVSALWRIDKRASVMDARVALILEQITALRSDHKERLDDHELRLRGLEQRLK* |
| ACM36_107655 | ACM36_1076552 | F027862 | HADYSIFRAWCNGNRCDDHAVKGYAKEIAGDGTITWYTTEEQVYLDIDSLEDWQVIRYTSEELREMNIMPEDCTAESEQDGTCGYGLFPPNP* |
| ACM36_107709 | ACM36_1077092 | F001971 | MTYEEFIHKGTDFYMDMVRLIDIKLKYRMSLADDEKEMQEHILEFQKQIKINELRDRFEKCWEVDGCYK* |
| ACM36_107919 | ACM36_1079192 | F015093 | MRIQMLKSTVVDLKPVQIGDFVETDQKSALLLIGIGKAMPAPLPKEVVIEAEEEPQIVKPAPKRRKTNASQPRV* |
| ACM36_108516 | ACM36_1085161 | F018167 | MIDFNTFQLDRLSKLIETIQGYTDNNLRFPKAGELVEKAYAEYSNGLLKRVNLPGIDLVGPGGTTYESKVTQFANKSQMAVRSLILKNRRAAKDYEDKLADYFIITDVKKGKACCIASAKLYNFKDNGAVMTASADPEVTDFFLTGYNRLEE |
| ACM36_108886 | ACM36_1088862 | F002090 | MIIFDQTLNGNHYIGTNFSGLIAGPANIAGVLTIDGEYVVV* |
| ACM36_110196 | ACM36_1101961 | F016995 | LSPTDFCTFYIDIINNLRENFKYQEKNEAMQWCLSNIKRFKVFLIIFEANELGNQVYKENISSKLPEYSYKTIAKIIDDGLKKGYFIKLNPRIFKSKDKKIRNIRPSEDLTVEFINWNLDIFSSILNYMKKYFIYGKKVSKNK* |
| ACM36_111144 | ACM36_1111442 | F004898 | MDLSELIEELREIEIYDTDPQDWMGYLKEDDYWVPDPELVY* |
| ACM36_111272 | ACM36_1112721 | F000948 | DEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGESKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAATLASTLDKGFPYDD* |
| ACM36_113374 | ACM36_1133742 | F051454 | MTINEFRNNHCGRGGSTPPPPFTTYGGELESTGTKGYSFVRDCSTVTGKFINANESYALAVINLLIKLRGLGHLAT |
| ACM36_115503 | ACM36_1155031 | F038300 | MTNIYKVIVDVVEKSTSTREEIIKAESADEAKQKVINYCKEQLVDNDNLKEIVEVKVSNAKDAVTEVKNKDLPNDRAGNPVSYT* |
| ACM36_117063 | ACM36_1170631 | F026012 | QALYSIVISLQNNLCINFFDMWIYEMYINKVPTHNKFMKQKSQNLEPGEYITIKLAYGSSGSQEKK* |
| ⦗Top⦘ |