NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001824

3300001824: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g



Overview

Basic Information
IMG/M Taxon OID3300001824 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0096913 | Gp0056135 | Ga0016828
Sample NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19123216
Sequencing Scaffolds25
Novel Protein Genes28
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus1
Not Available9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeplume frontplanktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)4.8818Long. (o)-51.3608Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F000948Metagenome / Metatranscriptome823Y
F001971Metagenome / Metatranscriptome609Y
F002090Metagenome / Metatranscriptome595Y
F002907Metagenome / Metatranscriptome521Y
F004898Metagenome / Metatranscriptome419Y
F005478Metagenome / Metatranscriptome399Y
F011300Metagenome / Metatranscriptome292Y
F012436Metagenome / Metatranscriptome280Y
F015093Metagenome / Metatranscriptome257Y
F016805Metagenome / Metatranscriptome244N
F016995Metagenome243Y
F018167Metagenome236Y
F026012Metagenome / Metatranscriptome199Y
F027862Metagenome / Metatranscriptome193Y
F030352Metagenome / Metatranscriptome185N
F035678Metagenome / Metatranscriptome171Y
F038300Metagenome / Metatranscriptome166N
F046343Metagenome / Metatranscriptome151Y
F051454Metagenome144Y
F064623Metagenome / Metatranscriptome128N
F066589Metagenome / Metatranscriptome126Y
F082390Metagenome / Metatranscriptome113Y
F084398Metagenome / Metatranscriptome112N
F094809Metagenome / Metatranscriptome105N
F095501Metagenome / Metatranscriptome105N
F096844Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ACM36_100073All Organisms → Viruses991Open in IMG/M
ACM36_100394All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae5120Open in IMG/M
ACM36_100701All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta529Open in IMG/M
ACM36_101323All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus2457Open in IMG/M
ACM36_101944Not Available744Open in IMG/M
ACM36_102331All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium1631Open in IMG/M
ACM36_102445All Organisms → Viruses → Predicted Viral1389Open in IMG/M
ACM36_102619All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E4284Open in IMG/M
ACM36_103620All Organisms → Viruses → Predicted Viral1083Open in IMG/M
ACM36_103811Not Available653Open in IMG/M
ACM36_104091All Organisms → Viruses → Predicted Viral1169Open in IMG/M
ACM36_104166Not Available762Open in IMG/M
ACM36_105313All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1582Open in IMG/M
ACM36_105373Not Available572Open in IMG/M
ACM36_106050All Organisms → Viruses → Predicted Viral1421Open in IMG/M
ACM36_106628All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium541Open in IMG/M
ACM36_107655All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium554Open in IMG/M
ACM36_107709Not Available577Open in IMG/M
ACM36_107919Not Available642Open in IMG/M
ACM36_108516All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae596Open in IMG/M
ACM36_108886Not Available680Open in IMG/M
ACM36_111144All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae511Open in IMG/M
ACM36_111272All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium600Open in IMG/M
ACM36_113374Not Available576Open in IMG/M
ACM36_115503Not Available604Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ACM36_100073ACM36_1000732F002907MTKRNPYWFFQKWGIEEHSPLETLAEKVEQLEERIKLIEQEMVEQSNSLYECWNSLDARIDILSEHKTDV*
ACM36_100394ACM36_10039416F082390MVTVNLTEQQLALMEELVGKKFDEVAQAWLPAEETKDMNKLCYDTLLNLRCVRLSKEYDETYANWDKDFYSLDKKLFLKDVGLVTDEELAQQGIC*
ACM36_100394ACM36_1003948F096844MKLSPDSVSKIADALKPAIIEHMMNDDNVTQAMQDSVADGIREVMGDMDEDLFFEIGMLLFDRIDIK*
ACM36_100701ACM36_1007011F084398MARLELTLNFPKSFQIKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYE
ACM36_101323ACM36_1013233F012436KFLYPNDPPDAKCPHCGEKGRPCSHVDSLSRAYCRAACKRKYVDSETNK*
ACM36_101944ACM36_1019441F000744MKKGDVSVNLNVHEIGVILSALQLLENIDENRIAREYGSTAALYERLHSVWETLDRSETGLRNDVVPSY
ACM36_102331ACM36_1023314F095501MEDGMLVPVIIASVLTLMCVYGVITQKLIFTRHGLFWFGIMVFLANMISAVQTGGTGEAEMIMISTGLLYGLQAVLMYPFITHPFDNSNKAAYFAQKRIAICITSINGVIPVLHLLGFDLGIP
ACM36_102445ACM36_1024452F064623MNEEVTVLNSIGGCASSXXXXXXXXXXXXXNRDHFHQGINFGRCKHTLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMAVTHIENKGLPLHPTRTDNVEIHPQTKEIYRVHPQFVKNYTLEEYVRGGQDWFMTYEHIYNWTQRETKYPVLCVKSDVQWKYGKEIFVDFLGQKSVPLEYVQRDRNSTIDLVPENMKEEFTSILKEATELYNSLPEFRVV*
ACM36_102619ACM36_1026195F094809LFIPKKILARKCNISLESLDLLLELNAFKEEILVNTYLVTLYGIEEPNYALNTIPWMQIINLASDDDVSFKSDLSFSFVDSSGNNNDPMSLTINPILREIDFWDGYSNNTAEVFKSNLDFKAGVKTYLRKFNKLLKK*
ACM36_103620ACM36_1036204F035678MSEEKQYSKYRLDQLAKELGGKWYHQTVSNNRTEYKRIV
ACM36_103811ACM36_1038111F066589MEDENLYEKDFDENLPYISMDMGVDDVRQIHESISLHLQNWVSCPEKKERLEGLKDFFERLLLEYTFKIGE*
ACM36_104091ACM36_1040914F046343MTLAKTGTEILTKEEIDELNALKEAITYRPASVTTQKMEKFAELMVRSLEGKRSDSPQ*
ACM36_104166ACM36_1041662F012436MLLQQLINKFSYPNDPKDAKCPYCGEHGKPCSHVDSLARAYARGACKKKCEGSNK*
ACM36_105313ACM36_1053132F030352MRFILSLLILISSCSSGVDTDSIEIASLVLPDNQKRSYSIQCNLLPKQTIRDLEGIIPTFIKNLKESNDFESVYIHFDQLQIEKFFLQFEIANTEESFEEQLLENRFINRQCEGRVGAAKIYRLIDSFAIEPNTPYLIERSLCQFDDEKGYVDLMLAVDKLVLEGMLQNIKINSTVRELPNNSNFEWTNWYPNRTDIESFKNIWIESNLAKEIQQDFKETAACFGSQKYQAYKLI*
ACM36_105373ACM36_1053732F011300SWSMVMLLLATMMLGMWLLISSLGSNDADDDDDFGGGMMIPAYNPTN*
ACM36_106050ACM36_1060502F005478MYDDYDLDYTFSNDYNLDEDTYYEYYAQCDVDLDEDYAHNTQDYDTLAYRHYA*
ACM36_106628ACM36_1066281F016805VDPFLTPLVTAAIIAGVSALWRIDKRASVMDARVALILEQITALRSDHKERLDDHELRLRGLEQRLK*
ACM36_107655ACM36_1076552F027862HADYSIFRAWCNGNRCDDHAVKGYAKEIAGDGTITWYTTEEQVYLDIDSLEDWQVIRYTSEELREMNIMPEDCTAESEQDGTCGYGLFPPNP*
ACM36_107709ACM36_1077092F001971MTYEEFIHKGTDFYMDMVRLIDIKLKYRMSLADDEKEMQEHILEFQKQIKINELRDRFEKCWEVDGCYK*
ACM36_107919ACM36_1079192F015093MRIQMLKSTVVDLKPVQIGDFVETDQKSALLLIGIGKAMPAPLPKEVVIEAEEEPQIVKPAPKRRKTNASQPRV*
ACM36_108516ACM36_1085161F018167MIDFNTFQLDRLSKLIETIQGYTDNNLRFPKAGELVEKAYAEYSNGLLKRVNLPGIDLVGPGGTTYESKVTQFANKSQMAVRSLILKNRRAAKDYEDKLADYFIITDVKKGKACCIASAKLYNFKDNGAVMTASADPEVTDFFLTGYNRLEE
ACM36_108886ACM36_1088862F002090MIIFDQTLNGNHYIGTNFSGLIAGPANIAGVLTIDGEYVVV*
ACM36_110196ACM36_1101961F016995LSPTDFCTFYIDIINNLRENFKYQEKNEAMQWCLSNIKRFKVFLIIFEANELGNQVYKENISSKLPEYSYKTIAKIIDDGLKKGYFIKLNPRIFKSKDKKIRNIRPSEDLTVEFINWNLDIFSSILNYMKKYFIYGKKVSKNK*
ACM36_111144ACM36_1111442F004898MDLSELIEELREIEIYDTDPQDWMGYLKEDDYWVPDPELVY*
ACM36_111272ACM36_1112721F000948DEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGESKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAATLASTLDKGFPYDD*
ACM36_113374ACM36_1133742F051454MTINEFRNNHCGRGGSTPPPPFTTYGGELESTGTKGYSFVRDCSTVTGKFINANESYALAVINLLIKLRGLGHLAT
ACM36_115503ACM36_1155031F038300MTNIYKVIVDVVEKSTSTREEIIKAESADEAKQKVINYCKEQLVDNDNLKEIVEVKVSNAKDAVTEVKNKDLPNDRAGNPVSYT*
ACM36_117063ACM36_1170631F026012QALYSIVISLQNNLCINFFDMWIYEMYINKVPTHNKFMKQKSQNLEPGEYITIKLAYGSSGSQEKK*

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