3300001824: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g

Overview

Basic Information

• IMG/M Taxon OID: 3300001824
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056135 | Ga0016828
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19123216
• Sequencing Scaffolds: 25
• Novel Protein Genes: 28
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	1
Not Available	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 4.8818
  • Long. (^o): -51.3608
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F000948	Metagenome / Metatranscriptome	823	Y
F001971	Metagenome / Metatranscriptome	609	Y
F002090	Metagenome / Metatranscriptome	595	Y
F002907	Metagenome / Metatranscriptome	521	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005478	Metagenome / Metatranscriptome	399	Y
F011300	Metagenome / Metatranscriptome	292	Y
F012436	Metagenome / Metatranscriptome	280	Y
F015093	Metagenome / Metatranscriptome	257	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM36_100073	All Organisms → Viruses	991
ACM36_100394	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	5120
ACM36_100701	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	529
ACM36_101323	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	2457
ACM36_101944	Not Available	744
ACM36_102331	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	1631
ACM36_102445	All Organisms → Viruses → Predicted Viral	1389
ACM36_102619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E	4284
ACM36_103620	All Organisms → Viruses → Predicted Viral	1083
ACM36_103811	Not Available	653

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM36_100073	ACM36_1000732	F002907	MTKRNPYWFFQKWGIEEHSPLETLAEKVEQLEERIKLIEQEMVEQSNSLYECWNSLDARIDILSEHKTDV*
ACM36_100394	ACM36_10039416	F082390	MVTVNLTEQQLALMEELVGKKFDEVAQAWLPAEETKDMNKLCYDTLLNLRCVRLSKEYDETYANWDKDFYSLDKKLFLKDVGLVTDEELAQQGIC*
ACM36_100394	ACM36_1003948	F096844	MKLSPDSVSKIADALKPAIIEHMMNDDNVTQAMQDSVADGIREVMGDMDEDLFFEIGMLLFDRIDIK*
ACM36_100701	ACM36_1007011	F084398	MARLELTLNFPKSFQIKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYE
ACM36_101323	ACM36_1013233	F012436	KFLYPNDPPDAKCPHCGEKGRPCSHVDSLSRAYCRAACKRKYVDSETNK*
ACM36_101944	ACM36_1019441	F000744	MKKGDVSVNLNVHEIGVILSALQLLENIDENRIAREYGSTAALYERLHSVWETLDRSETGLRNDVVPSY
ACM36_102331	ACM36_1023314	F095501	MEDGMLVPVIIASVLTLMCVYGVITQKLIFTRHGLFWFGIMVFLANMISAVQTGGTGEAEMIMISTGLLYGLQAVLMYPFITHPFDNSNKAAYFAQKRIAICITSINGVIPVLHLLGFDLGIP
ACM36_102445	ACM36_1024452	F064623	MNEEVTVLNSIGGCASSXXXXXXXXXXXXXNRDHFHQGINFGRCKHTLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMAVTHIENKGLPLHPTRTDNVEIHPQTKEIYRVHPQFVKNYTLEEYVRGGQDWFMTYEHIYNWTQRETKYPVLCVKSDVQWKYGKEIFVDFLGQKSVPLEYVQRDRNSTIDLVPENMKEEFTSILKEATELYNSLPEFRVV*
ACM36_102619	ACM36_1026195	F094809	LFIPKKILARKCNISLESLDLLLELNAFKEEILVNTYLVTLYGIEEPNYALNTIPWMQIINLASDDDVSFKSDLSFSFVDSSGNNNDPMSLTINPILREIDFWDGYSNNTAEVFKSNLDFKAGVKTYLRKFNKLLKK*
ACM36_103620	ACM36_1036204	F035678	MSEEKQYSKYRLDQLAKELGGKWYHQTVSNNRTEYKRIV
ACM36_103811	ACM36_1038111	F066589	MEDENLYEKDFDENLPYISMDMGVDDVRQIHESISLHLQNWVSCPEKKERLEGLKDFFERLLLEYTFKIGE*
ACM36_104091	ACM36_1040914	F046343	MTLAKTGTEILTKEEIDELNALKEAITYRPASVTTQKMEKFAELMVRSLEGKRSDSPQ*
ACM36_104166	ACM36_1041662	F012436	MLLQQLINKFSYPNDPKDAKCPYCGEHGKPCSHVDSLARAYARGACKKKCEGSNK*
ACM36_105313	ACM36_1053132	F030352	MRFILSLLILISSCSSGVDTDSIEIASLVLPDNQKRSYSIQCNLLPKQTIRDLEGIIPTFIKNLKESNDFESVYIHFDQLQIEKFFLQFEIANTEESFEEQLLENRFINRQCEGRVGAAKIYRLIDSFAIEPNTPYLIERSLCQFDDEKGYVDLMLAVDKLVLEGMLQNIKINSTVRELPNNSNFEWTNWYPNRTDIESFKNIWIESNLAKEIQQDFKETAACFGSQKYQAYKLI*
ACM36_105373	ACM36_1053732	F011300	SWSMVMLLLATMMLGMWLLISSLGSNDADDDDDFGGGMMIPAYNPTN*
ACM36_106050	ACM36_1060502	F005478	MYDDYDLDYTFSNDYNLDEDTYYEYYAQCDVDLDEDYAHNTQDYDTLAYRHYA*
ACM36_106628	ACM36_1066281	F016805	VDPFLTPLVTAAIIAGVSALWRIDKRASVMDARVALILEQITALRSDHKERLDDHELRLRGLEQRLK*
ACM36_107655	ACM36_1076552	F027862	HADYSIFRAWCNGNRCDDHAVKGYAKEIAGDGTITWYTTEEQVYLDIDSLEDWQVIRYTSEELREMNIMPEDCTAESEQDGTCGYGLFPPNP*
ACM36_107709	ACM36_1077092	F001971	MTYEEFIHKGTDFYMDMVRLIDIKLKYRMSLADDEKEMQEHILEFQKQIKINELRDRFEKCWEVDGCYK*
ACM36_107919	ACM36_1079192	F015093	MRIQMLKSTVVDLKPVQIGDFVETDQKSALLLIGIGKAMPAPLPKEVVIEAEEEPQIVKPAPKRRKTNASQPRV*
ACM36_108516	ACM36_1085161	F018167	MIDFNTFQLDRLSKLIETIQGYTDNNLRFPKAGELVEKAYAEYSNGLLKRVNLPGIDLVGPGGTTYESKVTQFANKSQMAVRSLILKNRRAAKDYEDKLADYFIITDVKKGKACCIASAKLYNFKDNGAVMTASADPEVTDFFLTGYNRLEE
ACM36_108886	ACM36_1088862	F002090	MIIFDQTLNGNHYIGTNFSGLIAGPANIAGVLTIDGEYVVV*
ACM36_110196	ACM36_1101961	F016995	LSPTDFCTFYIDIINNLRENFKYQEKNEAMQWCLSNIKRFKVFLIIFEANELGNQVYKENISSKLPEYSYKTIAKIIDDGLKKGYFIKLNPRIFKSKDKKIRNIRPSEDLTVEFINWNLDIFSSILNYMKKYFIYGKKVSKNK*
ACM36_111144	ACM36_1111442	F004898	MDLSELIEELREIEIYDTDPQDWMGYLKEDDYWVPDPELVY*
ACM36_111272	ACM36_1112721	F000948	DEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGESKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAATLASTLDKGFPYDD*
ACM36_113374	ACM36_1133742	F051454	MTINEFRNNHCGRGGSTPPPPFTTYGGELESTGTKGYSFVRDCSTVTGKFINANESYALAVINLLIKLRGLGHLAT
ACM36_115503	ACM36_1155031	F038300	MTNIYKVIVDVVEKSTSTREEIIKAESADEAKQKVINYCKEQLVDNDNLKEIVEVKVSNAKDAVTEVKNKDLPNDRAGNPVSYT*
ACM36_117063	ACM36_1170631	F026012	QALYSIVISLQNNLCINFFDMWIYEMYINKVPTHNKFMKQKSQNLEPGEYITIKLAYGSSGSQEKK*