3300001816: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM41, ROCA_DNA031_2.0um_3k

Overview

Basic Information

• IMG/M Taxon OID: 3300001816
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056139 | Ga0016782
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM41, ROCA_DNA031_2.0um_3k
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3496775
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002035	Metagenome / Metatranscriptome	601	Y
F004546	Metagenome / Metatranscriptome	433	Y
F005478	Metagenome / Metatranscriptome	399	Y
F005505	Metagenome / Metatranscriptome	398	Y
F014019	Metagenome / Metatranscriptome	266	Y
F016009	Metagenome / Metatranscriptome	250	Y
F016797	Metagenome	244	N
F020012	Metagenome / Metatranscriptome	226	Y
F022076	Metagenome / Metatranscriptome	216	Y
F022889	Metagenome / Metatranscriptome	212	Y
F034111	Metagenome / Metatranscriptome	175	N
F041200	Metagenome / Metatranscriptome	160	Y
F065639	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM41_100167	Not Available	584
ACM41_100438	Not Available	723
ACM41_100530	Not Available	1965
ACM41_100628	Not Available	786
ACM41_101151	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	756
ACM41_101318	Not Available	716
ACM41_101823	All Organisms → Viruses → Predicted Viral	1012
ACM41_103384	Not Available	803
ACM41_104100	Not Available	582
ACM41_104519	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	517
ACM41_104574	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	741
ACM41_104955	Not Available	749
ACM41_105528	All Organisms → Viruses	572

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM41_100167	ACM41_1001671	F014019	MSKKNFDIYDYVHNNKFSLKVEQKATKVSKGYNDIRKTNINEVKIVDGKFSLSESLEGEKKLSTEVKKHFLEIISTYKAFQE
ACM41_100438	ACM41_1004381	F020012	KGVSTILLSAQITNTGTVNQPVTISITSNRDLPVPQVDSINNSGSFLSASALXAKNQIFIEKESAAYTNFQNNLQPIPFSFTSSFFEEYVRTAIDGVEADLIAAEGGTLQSKKAALSYYNKNGEILIPNNYFTASYQAIDYANLLVQQILINESVTGSSDVTRLYQESVTQSIDNSLIAESGSISASVDLLNAISNTISNPTRVEQAPVDLITNVEIPAGDSLSPIVAGKLVLEQQFSLI
ACM41_100530	ACM41_1005301	F041200	MFYAMKLVVGIVLFLQVGITNTFSQDLIKVGDVTNEIRLGPFAGNANLAMGVRNITEELLMDLDYDLSPYAETQVNIRLVFFDVKNIGKSIGVYHNKLSATQIIAIGELQEGKKIKKRVTKKGVSKEISNSTLVVASDGSFNQQTASNAL
ACM41_100628	ACM41_1006282	F005478	MLQYIQNLDELMYDDYDLDYTFGNDYNLDEDTYYEYHAQLDAQDLDEEYTRDAHDYDTLAYRHYA*YNLAHPYAIARHVCH*
ACM41_101151	ACM41_1011513	F002035	WGGSILPLYIHMGEQVANNREVQEVMYLHHKDGKWYILSEPKSPGLVKKEYLPIGNRLVYPKKWGRKRAAEHLLQHLISDSEKVCEKANQRLEVLKGLSAEVEGWK*
ACM41_101318	ACM41_1013181	F022889	MSRPVPKIYAGNTVKKRDRLSFKNFVLEVIEDTFINQFTPTSSSLDSDTQTLFTLFLGPKDGNSDGDLLDRVDILGYRFTYEDLQVDNAYDYLDVFLYGVKQDRAKYNVKLFDGEGTELTSGQYVSGSKEIRMIFNEDITRV
ACM41_101823	ACM41_1018232	F016797	MNTLDILKAKVNLQTTIIKFTNSIEELQSKHPERIDLIDSMLESLEDVSQFQSVFMQFEDEYLLECKANLRLQMVIADLKQEVLTLKEEIKDLKTEL*
ACM41_103384	ACM41_1033841	F004546	MPKQTLEEEFPFDEFPWKLIYKDGKESRKCYFQSEDHRKKHVERYKLKKKD
ACM41_103384	ACM41_1033842	F034111	MLELTLASLLNTMSADFCALMETEKDVVKSAFIAYSMANKQYGPDNVIKIVTEANLIEIKSLAVSSVVTKCPNKL*
ACM41_104100	ACM41_1041002	F005478	MYDDYDLDYTFVSDYTLDEDAYYEMGGLDLDEEYARDTQDYDTLAYRHYA*TRLSTHAHTLPC*
ACM41_104519	ACM41_1045192	F022076	VLVKAKREPDPYEMNDIKGTRMPDYSGVSKDRDIYGELGWIPNFNVKCSKNNNVRHSTNREYFDGPMNYHVTFNNSTMTNSEFFR*
ACM41_104574	ACM41_1045742	F005505	NYFFFER*NISELDEVRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFILLAFLPIFYNFYNVYHKYVATIPMQNSLLQTSFFIFFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQFVYLYLG*FVHHLDLFDHYIFQFSQTFVRKCSSYSLRTLVLRKEAAKKTNSRTAFAK**
ACM41_104955	ACM41_1049551	F065639	MNKKETNRALQRGIKPEFTKGVKLLDVDTTIAEYMVDTVIPDVEEHNSKVKVPLL
ACM41_105528	ACM41_1055282	F016009	MTKEKRYHKEMRRYRIIEHELRGDSVFIVEWNDRWFLGLFGSWHPKFQTLKLEEAIDKIHRLVTLKLGK*