3300001802: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a

Overview

Basic Information

• IMG/M Taxon OID: 3300001802
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056363 | Ga0012959
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2298590
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Ábidos, Para, Brazil
• Coordinates
  • Lat. (^o): -1.919017
  • Long. (^o): -55.525717
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F001942	Metagenome / Metatranscriptome	613	Y
F007645	Metagenome / Metatranscriptome	347	Y
F008595	Metagenome / Metatranscriptome	331	Y
F011396	Metagenome / Metatranscriptome	291	Y
F042900	Metagenome / Metatranscriptome	157	Y
F043415	Metagenome / Metatranscriptome	156	Y
F044279	Metagenome / Metatranscriptome	154	N
F073277	Metagenome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
RCM38_10012	Not Available	649
RCM38_10668	All Organisms → Viruses → Predicted Viral	1301
RCM38_11524	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	685
RCM38_11969	Not Available	547
RCM38_12067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	657
RCM38_12217	All Organisms → cellular organisms → Bacteria	567
RCM38_13284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	745
RCM38_13813	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	583
RCM38_13890	Not Available	717

Sequences

Scaffold ID	Protein ID	Family	Sequence
RCM38_10012	RCM38_100122	F044279	RIQEKEFKEPEKISLRTPKELELKETELVSVFFRLKFITLEI*
RCM38_10668	RCM38_106684	F043415	IIDQEYFSIEGGTVPVDGFQPRAIMKSSDAPYISQGDKLLVNAITTNKGNTLVPATTFVIQTVEPDNTGLVSLVLEEE*
RCM38_11524	RCM38_115242	F073277	MKLAVTIDVXXXXXXXXXXXXXXXNFPKPKLFDNMEDAEEERAKWNTGVIVNYETGECVNKIRSFTDAERARAEERARINSYDGTSTTKDVTQ*
RCM38_11969	RCM38_119692	F001582	MPLESALDFNSYVDTTTGHGVTATFFEVQSALWDARNGLIDTWYDIDSGDAYSVNIIIDQEYFSIEGGTVPVDGFQPRAIMKSSDAPYISQGDKLLVNAITTNKGNTLV
RCM38_12067	RCM38_120672	F001942	MARKSSEEHQANSRLGALGESLVQTFLLEFCDFVYPTQDKHPADILAEVSNCKYTVQVKARRETKEGKYVFATETSRSMSDVYKNYHCDILAFVFVNQEHKRILFKPNTSSQTYYTFDKKIIKPNMEITSLQETLDALSQVPVLNPVIK*
RCM38_12217	RCM38_122172	F011396	MSDLPEYFEIAEKIVSRAERGIPQDRWFRGDQDMEAIVKAYIALRNALTMCSNTSFIW*
RCM38_13284	RCM38_132843	F007645	MAKYVYGKRDTKTVKSIYDRASIGEKAIWNFANSLGVNIVRVRKNKERNETTVGDTFVGYHSGKVSIYQQRGVPSRPLHFVRPTPLGKDNKGMQILEVASNRDVQEVLEALK
RCM38_13813	RCM38_138132	F042900	MRFFYRLKGKLFRKIVNIADRIDIWFNNKFNVNLKQKALEVAQDKIPLSHLDKTIGSHLKIKTGEKNGN*
RCM38_13890	RCM38_138902	F008595	MSKEDNKMENQEPVIITYNGTEYRAAKLNVAGKKLARLQDAYDDYVITNEYKNLVIESFDRAINVEAEAEVVEEE*