3300001791: floor swab of gowning area - replicate A (NASA floor swab of gowning area (6 samples), ASSEMBLY_DATE=20130911)

Overview

Basic Information

• IMG/M Taxon OID: 3300001791
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0056945 | Ga0024820
• Sample Name: floor swab of gowning area - replicate A (NASA floor swab of gowning area (6 samples), ASSEMBLY_DATE=20130911)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28776957
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: NASA Jet Propulsion Laboratory, Pasadena, California, USA
• Coordinates
  • Lat. (^o): 34.1991
  • Long. (^o): -118.1715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077781	Metagenome / Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGIcombinedJ20147_1003116	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes	1622

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGIcombinedJ20147_1003116	JGIcombinedJ20147_10031161	F077781	AHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*NHRSSGHTCFRERMLRVSCRLSLDLSSSWVRG*