3300001788: BioPara_130528DK_S3

Overview

Basic Information

• IMG/M Taxon OID: 3300001788
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099430 | Gp0056061 | Ga0013022
• Sample Name: BioPara_130528DK_S3
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 192504559
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Biogas Reactor Microbial Communities From The Max Planck Institute, Germany
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Grass → Composting → Bioreactor → Biogas Reactor → Biogas Reactor Microbial Communities From The Max Planck Institute, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F021959	Metagenome / Metatranscriptome	216	Y
F062734	Metagenome / Metatranscriptome	130	N
F067884	Metagenome / Metatranscriptome	125	N
F085349	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BP130528DKS3_1676739	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513
BP130528DKS3_1686664	Not Available	571
BP130528DKS3_1689492	Not Available	591
BP130528DKS3_1706048	Not Available	787
BP130528DKS3_1713568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	987

Sequences

Scaffold ID	Protein ID	Family	Sequence
BP130528DKS3_1676739	BP130528DKS3_16767392	F067884	EWFSALARQAQKFVLYDEDQVSMLREITDTVRVYDISMEYVLGTVDRIPESRVEYACVGFSETDWVH*
BP130528DKS3_1686664	BP130528DKS3_16866641	F014003	METLFNKAKMKSWIKKARKSSSFGYGHGYITDGYILLIEEQHMQPVILELFGTLAPECRYTAEMFQKMMDLPNEVIEVIDSELEYAPKPKYRLRIFYDPKTGKELTIDGKYFDLLDTPRAHKFCTNDSMDRLWIKYYNDDVVGVIAPVVLQEQLSHIRFKAEEEREQV
BP130528DKS3_1689492	BP130528DKS3_16894921	F062734	GRQYTAVVMDNESVADATVIGEYYTYPMWVWMLFGVLVACLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLQG*
BP130528DKS3_1706048	BP130528DKS3_17060482	F085349	MSMFKFLSTAEQLLEERRKNEALRSLVKDLEDAALELAEIVAANEEAIQEVQNG*
BP130528DKS3_1713568	BP130528DKS3_17135684	F021959	MEVEIVSEQDIARLQEQIKTLFSDVDELKTDIKEIKQQLTNRLPLWATMLISVLT