3300001776: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr47

Overview

Basic Information

• IMG/M Taxon OID: 3300001776
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0056358 | Ga0013016
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr47
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150644035
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	10
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Vondamm Vents, Mid Cayman Rise
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F002745	Metagenome	533	Y
F012464	Metagenome / Metatranscriptome	280	Y
F012921	Metagenome / Metatranscriptome	276	Y
F020256	Metagenome	225	Y
F020787	Metagenome / Metatranscriptome	222	N
F035337	Metagenome	172	N
F042560	Metagenome	158	Y
F047303	Metagenome	150	Y
F054935	Metagenome / Metatranscriptome	139	N
F058220	Metagenome / Metatranscriptome	135	N
F062154	Metagenome / Metatranscriptome	131	N
F062834	Metagenome / Metatranscriptome	130	N
F080654	Metagenome / Metatranscriptome	115	N
F089571	Metagenome	109	N
F090504	Metagenome	108	N
F092209	Metagenome / Metatranscriptome	107	Y
F096028	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
supr47_1001079	All Organisms → cellular organisms → Bacteria	11642
supr47_1001827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	8208
supr47_1001894	All Organisms → cellular organisms → Bacteria → Proteobacteria	8023
supr47_1005603	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3686
supr47_1006260	Not Available	4897
supr47_1007040	Not Available	3122
supr47_1013863	Not Available	1847
supr47_1029993	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1022
supr47_1032128	Not Available	967
supr47_1036071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	879
supr47_1041272	Not Available	788
supr47_1041949	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	778
supr47_1044549	Not Available	739
supr47_1044592	Not Available	739
supr47_1053366	Not Available	634
supr47_1060177	Not Available	566
supr47_1060620	Not Available	563

Sequences

Scaffold ID	Protein ID	Family	Sequence
supr47_1001079	supr47_10010796	F089571	MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE*
supr47_1001827	supr47_10018271	F042560	KKKGIFPIVSMATKNNIKEFIKTAVMPLFHISSWQ*
supr47_1001894	supr47_100189410	F090504	MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQLLFFFPIVLIALHSPVEKEK*
supr47_1005603	supr47_10056033	F054935	MKRRTFIKYTSLISTAVFLPLTQLFGAKPKPKNPYTTFDFNLPLQGSPFRKNCDSLDNYNDISFKTMMEDIVHYRTPAKLRDKLILGIKTEDD*
supr47_1006260	supr47_10062606	F058220	MQIFVDCDDTLILYDSPAGIHPYGVRRGEPWHPNQPLVDALLETEHPVFVWSGGGAWYAEIIAGKLGLDFPCLDKDETTFEVIQEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPNQL*
supr47_1007040	supr47_10070402	F080654	VVADVISEETAESEPVGKTDLEERQDLWNKIQKFNPEASAMDYYDNSEWDLEKMRSDLKVILEKERFGR*
supr47_1013863	supr47_10138633	F047303	MVLRLIHALFGAFLGAAFGAANAFWIFDEFNWNLISICAGICGVLAFVWGEPFIEWLKENWWWD*
supr47_1029993	supr47_10299932	F062154	VDANGVKVLSVVNARPEQPVNSVANGVRAPSVVNARPERLVNRVVNGVRVPSVVNARPERLVNRVVNGVRVPSVVNVRPEQ
supr47_1032128	supr47_10321281	F012921	MADEFDFGFSAVSTEEFSKTQTVTEVQPSAVSSEEFGELKKKLDSISSLIQTLGDREDTSLFDETGEIVAANGEKISRVEDKVDKILAMESSQITSALEEQGSSIRAVIDEVEERKGELNEKFSGKLKELE
supr47_1036071	supr47_10360711	F001651	VALQNGKKIALAQRRHRVIQAKIAGRSEAEIAEQEGVAQYTIWKDIRAYLGEVRREDKEAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGA*
supr47_1038769	supr47_10387691	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFVLDEEGTEVVFNFEVNAGFDVEKGEIDMEELRSYFDAADDIGKKFTDELLRSVFDLDDTGHIWES*
supr47_1041272	supr47_10412721	F002745	MKTFKQYLREFAQQSTSDYVFNTGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLISARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFSKVEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDSGAVFEIWGNMKKHLKGDGRKIAAVIKDYFDGVEKIIKKNKEVMSDIFYGYTKSKRMTDNSWDEQIVNNIDIYKIHVIK
supr47_1041949	supr47_10419491	F020256	KVVVPSNRAAIEAELLKRPWNGRNPAEAINRNWEPGETVADLKAENIDHGIGG*
supr47_1044549	supr47_10445492	F012464	VAFTEPDVAVIVAVPSATAVTRPADDTVATDELDVAQVTVGLGIVLLLASFTVGTSVVVSSTDAKLKLVGASVTEAAA*
supr47_1044592	supr47_10445921	F092209	MNKIKYLGTLIGITTVLVILGMATTHVMADSPTDADGKSQGSGESGHHEYIGESGEIEKCEGMVYESAEDAKAAAIENGCSGYHEFDKDGTVWYMPDC*
supr47_1045031	supr47_10450312	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKGETDMEELRSYFDAADDIGKKFTDELL
supr47_1053366	supr47_10533661	F035337	WYMEYSKLPVEITWTDEEQATIDIICDACEKRYIILTDDISNLEQCSFCGHYLEVSTEDIHEFQEDSWN*
supr47_1060177	supr47_10601772	F062834	MDKNLKKMIDNVADGDMAAAGDAFMAAADARRGDAWQQAKIDYAQKAFKEVDLGQETSGVDTGITGDPAEVEEE*
supr47_1060620	supr47_10606201	F096028	HITISVDFRVDWASFELIDGDFHSHSFGGSLKRNDSMLEEN*