3300001725: Marine viral communities from the Deep Pacific Ocean - MSP-82

Overview

Basic Information

• IMG/M Taxon OID: 3300001725
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0056682 | Ga0006042
• Sample Name: Marine viral communities from the Deep Pacific Ocean - MSP-82
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71347098
• Sequencing Scaffolds: 17
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
Not Available	12
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -25.4941
  • Long. (^o): -179.5286
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003761	Metagenome / Metatranscriptome	470	Y
F005148	Metagenome / Metatranscriptome	410	Y
F010945	Metagenome / Metatranscriptome	297	Y
F012462	Metagenome	280	Y
F018942	Metagenome	232	Y
F022674	Metagenome	213	Y
F037815	Metagenome	167	Y
F039090	Metagenome	164	Y
F041259	Metagenome / Metatranscriptome	160	Y
F042930	Metagenome / Metatranscriptome	157	Y
F043615	Metagenome	156	Y
F052875	Metagenome	142	N
F054156	Metagenome / Metatranscriptome	140	N
F056525	Metagenome / Metatranscriptome	137	N
F078927	Metagenome / Metatranscriptome	116	Y
F087293	Metagenome / Metatranscriptome	110	N
F089415	Metagenome	109	N
F092722	Metagenome	107	Y
F105340	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24650J20062_1004172	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	2050
JGI24650J20062_1011931	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	935
JGI24650J20062_1012921	Not Available	873
JGI24650J20062_1015017	Not Available	772
JGI24650J20062_1017160	Not Available	695
JGI24650J20062_1017533	Not Available	684
JGI24650J20062_1018253	All Organisms → cellular organisms → Bacteria	663
JGI24650J20062_1020122	Not Available	619
JGI24650J20062_1020775	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	605
JGI24650J20062_1021234	Not Available	597
JGI24650J20062_1023281	Not Available	562
JGI24650J20062_1024116	Not Available	549
JGI24650J20062_1024152	Not Available	548
JGI24650J20062_1025199	Not Available	533
JGI24650J20062_1025344	Not Available	531
JGI24650J20062_1025713	Not Available	527
JGI24650J20062_1025900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24650J20062_1004172	JGI24650J20062_10041725	F054156	MLEALLFTGQIPEIDWEHGDDLCDCTFQRIGYWTNPYLARTLKIRLCCAWKVLAEQNPEIAALMQEIPAYDDYNGKRWVSEPAAWDSKEADMPRALWHRQLSIQQEKPLEQVRREYDHLEPPRRVRHGHTAKV*
JGI24650J20062_1011931	JGI24650J20062_10119313	F092722	LMYFVVGDIRFPITFPANWANIGVPNNEAVSQPVQIPTQVVGYKTTK*
JGI24650J20062_1012921	JGI24650J20062_10129211	F039090	KGGNDADSLVNTATGEVVTGDEYVDMMLRNYEEANEAFQQAREDRERARMVLFQYMDSEGSNGIPSETYNVRRKQTYDYTKNKDGFLPLMEILNGPDLVKVYTPPTPADGKWNAQQIKALVETYPQIGEVLEQVREAKVTLEFSRRANGE*
JGI24650J20062_1015017	JGI24650J20062_10150171	F089415	VFLTEEREGPPNEADWLYESDICRRELPSGSGRTYCESLKPDSLHVAQYLAYHRIKWFDGTKGKMVVGKRGQPRMCRCGDTESDTGAAKPQMW*
JGI24650J20062_1017160	JGI24650J20062_10171602	F010945	VVTRTDCPCGKADLSSAQMTMHRRSKAHKDWAAENGEIEDVAPAGDSDFEGILEAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKYVAAETERIRL
JGI24650J20062_1017533	JGI24650J20062_10175331	F041259	MNKSRVARDLWRKVFNDNIINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPM
JGI24650J20062_1017533	JGI24650J20062_10175333	F005148	MKQKKYQEFLKRNLPESEEVECKNCELKFYDEWNLLSLSLLNMCLLCSNRNLDKQTIERAYNVE*
JGI24650J20062_1018253	JGI24650J20062_10182532	F078927	MANVDKAFGLRPYKGAGWPVQQANKYNISPSSGYGTSIYQGDMVIFSGGYIETAAASS
JGI24650J20062_1019835	JGI24650J20062_10198352	F087293	LRSRDGQRRRDTDRDAELAGIRDSLGALQRVFTVYVEDRKMDMSDEAQAQISRVGQELAQGQATRDWNARYEKEQSRLMSTVQDDEGNILVSEDDVVKIQSDWQAAWAEGSKAVQGNFEDVINIQVEAARMVAQEVRRRGTEDRKRLSDEAKNAGKKALERAGVADLDTGAAIAGGNEELRGSALIERGLRRRNL*
JGI24650J20062_1020122	JGI24650J20062_10201221	F043615	YSEFKSGSLVRQQNGAWRLTRSRVCGGNNCGPRNGVAHDHRDTATMTEQDAVNLLIDWGYDLAEAKGLENYR*
JGI24650J20062_1020775	JGI24650J20062_10207751	F012462	AYDQDITILGAKSSGKSYLANSIMKSLNGISVWVYDFNFQFHSSRAMVFHDINELLKVYDSAKRGHYILQPHQNDENTFRRFCSEGFKRGNLVLIMDEAHSFLTKQKQLKEFNNIILSGRPRGISCVTLSSRPSSLPNNVLSNAKHVFAFKLNLESDVKFLEGYLGEDVWILMPKDKRHKLKEEAELPEHTFFYRDMDKSE
JGI24650J20062_1021234	JGI24650J20062_10212343	F042930	MAHMLDKDTVNRILHLHQVQGLKVPIIAQRFGFSTGRIHGVIRRQAASNKPQASSNKRL
JGI24650J20062_1023281	JGI24650J20062_10232811	F037815	VGVAGFPGWVQGEADYIAFKRIKYPWLIVNRKQLWEMVETKLKERNYSPSIKPWYEKEAYATYDRSYFGKKDKFCWVPYEDIETLKDVEKL
JGI24650J20062_1024116	JGI24650J20062_10241162	F003761	AAIVELNTTEIWSHEPCWYIGEFNQPAPDSQSVRRSQTITVIRNDKRVKLTRDLGDARLFGEEFQLICGAPDGKGGGEAMYTVGEALQMAQDMNNMPPPKTEVRPKDWNKIFWENIEERNLWRRASSTFGALFRKQRNT*
JGI24650J20062_1024152	JGI24650J20062_10241521	F056525	VNRLFKGKHPKTLLEVFSEEEDDMPVVKGKHYPYTKKGKAAAAAAKKSGGKKK*
JGI24650J20062_1025199	JGI24650J20062_10251991	F010945	QMTMHNRSKAHKEWAXDDGEVVEDVDRDFEGILAAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISAETERIRLAGWGKGWNIT*
JGI24650J20062_1025344	JGI24650J20062_10253441	F022674	MMRYLVLFLFLTLFLSACDNVRHKIGLSAKPFATDGKFEDSAKINYTIIFGKVR
JGI24650J20062_1025713	JGI24650J20062_10257133	F052875	VELAAVQQLVAAVGPIGAMVVIGAWWFVSHQEKRNGAKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHMAQQHIRGR*
JGI24650J20062_1025900	JGI24650J20062_10259001	F105340	KKLYTGDLILVDAGGTIAESITATLKPSGVFMGCNYVDADGSQKFSRYWPGEAITAATSIEFHVITDPDQTYYIQGNATCSHGEICKVLNYTATVSTASAGSTKTGQSAFFVETSAAGVETIVGNVRVIGYKKDPNENPDGLDQYPVLEVWLPTHRDRFATTTVSTA*
JGI24650J20062_1026481	JGI24650J20062_10264813	F018942	TPDDVLKAVWKKILVWFWDLQYQNAVAEKEGMLKRLSGIGSS*