Sample 3300001714

Overview

Basic Information
IMG/M Taxon OID	3300001714 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067852 \| Gp0056795 \| Ga0006063
Sample Name	Marine viral communities from the Pacific Ocean - LP-39
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	38936985
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
unclassified Hyphomonas → Hyphomonas sp.	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	50.0005	Long. (^o)	-144.9958	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F000937	Metagenome	828	Y
F001536	Metagenome	675	Y
F005861	Metagenome	388	Y
F007824	Metagenome	344	Y
F008888	Metagenome / Metatranscriptome	326	Y
F032440	Metagenome	180	Y
F033218	Metagenome / Metatranscriptome	178	Y
F036423	Metagenome / Metatranscriptome	170	N
F037257	Metagenome / Metatranscriptome	168	Y
F070306	Metagenome / Metatranscriptome	123	Y
F075320	Metagenome	119	N

Family

Category

Number of Sequences

3D Structure?

F000567

Metagenome / Metatranscriptome

1020

F000937

Metagenome

828

F001536

Metagenome

675

F005861

Metagenome

388

F007824

Metagenome

344

F008888

Metagenome / Metatranscriptome

326

F032440

Metagenome

180

F033218

Metagenome / Metatranscriptome

178

F036423

Metagenome / Metatranscriptome

170

F037257

Metagenome / Metatranscriptome

168

F070306

Metagenome / Metatranscriptome

123

F075320

Metagenome

119

Scaffold	Taxonomy	Length	IMG/M Link
JGI24516J20058_1004668	Not Available	1035	Open in IMG/M
JGI24516J20058_1005255	Not Available	879	Open in IMG/M
JGI24516J20058_1005420	unclassified Hyphomonas → Hyphomonas sp.	839	Open in IMG/M
JGI24516J20058_1006262	Not Available	690	Open in IMG/M
JGI24516J20058_1006284	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
JGI24516J20058_1006570	unclassified Hyphomonas → Hyphomonas sp.	650	Open in IMG/M
JGI24516J20058_1006802	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	623	Open in IMG/M
JGI24516J20058_1007113	Not Available	594	Open in IMG/M
JGI24516J20058_1007119	Not Available	593	Open in IMG/M
JGI24516J20058_1007224	Not Available	584	Open in IMG/M
JGI24516J20058_1007377	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.	570	Open in IMG/M
JGI24516J20058_1007565	Not Available	553	Open in IMG/M
JGI24516J20058_1007952	Not Available	526	Open in IMG/M
JGI24516J20058_1008326	Not Available	502	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24516J20058_1004668

Not Available

1035

Open in IMG/M

JGI24516J20058_1005255

Not Available

879

Open in IMG/M

JGI24516J20058_1005420

unclassified Hyphomonas → Hyphomonas sp.

839

Open in IMG/M

JGI24516J20058_1006262

Not Available

690

Open in IMG/M

JGI24516J20058_1006284

All Organisms → cellular organisms → Bacteria

686

Open in IMG/M

JGI24516J20058_1006570

unclassified Hyphomonas → Hyphomonas sp.

650

Open in IMG/M

JGI24516J20058_1006802

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

623

Open in IMG/M

JGI24516J20058_1007113

Not Available

594

Open in IMG/M

JGI24516J20058_1007119

Not Available

593

Open in IMG/M

JGI24516J20058_1007224

Not Available

584

Open in IMG/M

JGI24516J20058_1007377

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.

570

Open in IMG/M

JGI24516J20058_1007565

Not Available

553

Open in IMG/M

JGI24516J20058_1007952

Not Available

526

Open in IMG/M

JGI24516J20058_1008326

Not Available

502

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24516J20058_1004668	JGI24516J20058_10046683	F001536	IKSLIEKIFGKFCKCEEPIILEDEEKYLAEEKALADHAESFKEIIEPEKIQCNTHSRFKKSCPLCVEAAK*
JGI24516J20058_1005255	JGI24516J20058_10052552	F007824	VYKLNSVENSGSFTWHGYRVSLLRKVDNASIYQMAKDFHTSLKASSAKAETKEESNY*
JGI24516J20058_1005420	JGI24516J20058_10054203	F005861	LKTNLRRIARRKRKNRTDTLIQYLIIGLVLALVLLVGCENGARHSLELTEPTDHTAGDDGGKMKYKIIWGSTKHND*
JGI24516J20058_1006262	JGI24516J20058_10062621	F036423	TVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK*
JGI24516J20058_1006284	JGI24516J20058_10062841	F008888	MAHEKQAPLGKSVKIKIPSQNLIVDPRGKSSIRGRSARIPTGDKVTVKGTGAARKQTATWF*
JGI24516J20058_1006570	JGI24516J20058_10065702	F005861	MKYRTLKLLRRRKNARKRNQTTEKGVQALVIGLALVLLLLVGCNGIKHVIEITEPLDHTTGDDGGKLKYKIIFGDKSQKE*
JGI24516J20058_1006802	JGI24516J20058_10068022	F033218	MAQPKTKKVICPRCTGNGYFKVKESVERQVDKVVQCPMCNSQGEIDEEKADTIYVDSDGLHXVH*
JGI24516J20058_1007113	JGI24516J20058_10071131	F037257	ASTAQLQTIAAELKIMANSWEKFGPRIAINGQAVEPPALRMTPTEAINKRPRKRHKLAMFL*
JGI24516J20058_1007119	JGI24516J20058_10071191	F000567	KESLLKLTQKITTWHEGMFKYITLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGLS
JGI24516J20058_1007224	JGI24516J20058_10072241	F070306	LTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
JGI24516J20058_1007377	JGI24516J20058_10073773	F032440	MANIYKNIQAKITSAGSYDDMYTAPDETTSIVKSIKLYNTHGSNLVVDIKVYDLSSTTDFEYDTVTVTASGSVDLLTFNN
JGI24516J20058_1007565	JGI24516J20058_10075652	F000937	MVKEIVLIILLINGELGLPSFPFEGTVHECFEYGDKMRVELATYNEERNAWFLNDGSGTWQGFICG*
JGI24516J20058_1007952	JGI24516J20058_10079521	F001536	MIKWIKSLIEKVFGKFCKCEEPIILEKKIKPQAVKEIITAEPEKIQCNTHSRFKKS
JGI24516J20058_1008326	JGI24516J20058_10083261	F075320	ETNLHFESTGMTVDDIDKAMRIASVELWDGQRPEVLVYDYLELXRGGGAGDAASVQAKIESFKQLVSDWRVVGVILHQSGRGSGNRGRAGGIEAGRYASTSESHFLIETWRRWDDTQLDEADRKHYETEISAGLWKNKSGDGEKAEVHLTIDKSGRLLEPGIVWEQI

Scaffold ID

Protein ID

Family

Sequence

JGI24516J20058_1004668

JGI24516J20058_10046683

F001536

IKSLIEKIFGKFCKCEEPIILEDEEKYLAEEKALADHAESFKEIIEPEKIQCNTHSRFKKSCPLCVEAAK*

JGI24516J20058_1005255

JGI24516J20058_10052552

F007824

VYKLNSVENSGSFTWHGYRVSLLRKVDNASIYQMAKDFHTSLKASSAKAETKEESNY*

JGI24516J20058_1005420

JGI24516J20058_10054203

F005861

LKTNLRRIARRKRKNRTDTLIQYLIIGLVLALVLLVGCENGARHSLELTEPTDHTAGDDGGKMKYKIIWGSTKHND*

JGI24516J20058_1006262

JGI24516J20058_10062621

F036423

TVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK*

JGI24516J20058_1006284

JGI24516J20058_10062841

F008888

MAHEKQAPLGKSVKIKIPSQNLIVDPRGKSSIRGRSARIPTGDKVTVKGTGAARKQTATWF*

JGI24516J20058_1006570

JGI24516J20058_10065702

F005861

MKYRTLKLLRRRKNARKRNQTTEKGVQALVIGLALVLLLLVGCNGIKHVIEITEPLDHTTGDDGGKLKYKIIFGDKSQKE*

JGI24516J20058_1006802

JGI24516J20058_10068022

F033218

MAQPKTKKVICPRCTGNGYFKVKESVERQVDKVVQCPMCNSQGEIDEEKADTIYVDSDGLHXVH*

JGI24516J20058_1007113

JGI24516J20058_10071131

F037257

ASTAQLQTIAAELKIMANSWEKFGPRIAINGQAVEPPALRMTPTEAINKRPRKRHKLAMFL*

JGI24516J20058_1007119

JGI24516J20058_10071191

F000567

KESLLKLTQKITTWHEGMFKYITLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGLS

JGI24516J20058_1007224

JGI24516J20058_10072241

F070306

LTCRVLGRSKLPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*

JGI24516J20058_1007377

JGI24516J20058_10073773

F032440

MANIYKNIQAKITSAGSYDDMYTAPDETTSIVKSIKLYNTHGSNLVVDIKVYDLSSTTDFEYDTVTVTASGSVDLLTFNN

JGI24516J20058_1007565

JGI24516J20058_10075652

F000937

MVKEIVLIILLINGELGLPSFPFEGTVHECFEYGDKMRVELATYNEERNAWFLNDGSGTWQGFICG*

JGI24516J20058_1007952

JGI24516J20058_10079521

F001536

MIKWIKSLIEKVFGKFCKCEEPIILEKKIKPQAVKEIITAEPEKIQCNTHSRFKKS

JGI24516J20058_1008326

JGI24516J20058_10083261

F075320

ETNLHFESTGMTVDDIDKAMRIASVELWDGQRPEVLVYDYLELXRGGGAGDAASVQAKIESFKQLVSDWRVVGVILHQSGRGSGNRGRAGGIEAGRYASTSESHFLIETWRRWDDTQLDEADRKHYETEISAGLWKNKSGDGEKAEVHLTIDKSGRLLEPGIVWEQI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001714: Marine viral communities from the Pacific Ocean - LP-39

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences