3300001712: Marine viral communities from the Pacific Ocean - LP-31

Overview

Basic Information

• IMG/M Taxon OID: 3300001712
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067852 | Gp0056790 | Ga0006058
• Sample Name: Marine viral communities from the Pacific Ocean - LP-31
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28037777
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.969
  • Long. (^o): -130.6661
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001136	Metagenome / Metatranscriptome	767	Y
F006323	Metagenome	376	Y
F015491	Metagenome	254	Y
F020998	Metagenome / Metatranscriptome	221	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24511J20085_102651	Not Available	610
JGI24511J20085_102996	Not Available	580
JGI24511J20085_104301	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	505
JGI24511J20085_104352	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24511J20085_102651	JGI24511J20085_1026512	F020998	MQTSKRPGYIWRVDDHIDLMLALFDILDQAAVDYDRSEDVVDDFQAYLKDWAKRRDEKPER*
JGI24511J20085_102996	JGI24511J20085_1029962	F001136	MVVDDSISQALNRIADGIEENNIVLNRIANHYDGVVPVMTRNANRAEAQGKAIDEELDNSFGEKVRSIFKPQTN*
JGI24511J20085_104301	JGI24511J20085_1043011	F015491	MKKTKRQRSAKVQALPQVTPRKWSKKSVRIFDKQFDRFLYDELYVPVRKNWGEEIVKYERDMFGDSK*
JGI24511J20085_104352	JGI24511J20085_1043521	F006323	SSDLYQLHIKRKVEMSKNMHKLGNLTRDDINFPKHLTPEIVHTAXFIHNAPSKEDMTKRVEHSAKLIGGEAMTYAMALLVLPHLIDNTTHSQDYKDFLASKKKTIN*