3300001706: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10

Overview

Basic Information

• IMG/M Taxon OID: 3300001706
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095508 | Gp0056338 | Ga0004508
• Sample Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 101540249
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobotulus → Desulfobotulus mexicanus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → Colwellia psychrerythraea	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034761	Metagenome / Metatranscriptome	174	Y
F041201	Metagenome / Metatranscriptome	160	Y
F047064	Metagenome / Metatranscriptome	150	Y
F050381	Metagenome / Metatranscriptome	145	Y
F055742	Metagenome / Metatranscriptome	138	N
F061862	Metagenome	131	Y
F088283	Metagenome / Metatranscriptome	109	Y
F090406	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI2161J19892_1001576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3473
JGI2161J19892_1002279	All Organisms → cellular organisms → Bacteria → Proteobacteria	2888
JGI2161J19892_1006220	Not Available	1633
JGI2161J19892_1006313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobotulus → Desulfobotulus mexicanus	1615
JGI2161J19892_1011125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1091
JGI2161J19892_1017223	Not Available	809
JGI2161J19892_1022109	Not Available	686
JGI2161J19892_1028492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → Colwellia psychrerythraea	592
JGI2161J19892_1030615	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI2161J19892_1001576	JGI2161J19892_10015764	F047064	MDTIEIKASKSWKHDVIEYFEDLEIICHDYSRTILRYLGKLNRLLHEERIHQSEYDALNKSLLKASAALNTVPRTIQDLK*
JGI2161J19892_1002279	JGI2161J19892_10022791	F041201	MLVPDRGGAEFQTAGNLLVVEDLKRGSNKDMGLKDIFEIASLKDPQYNCPNC
JGI2161J19892_1006220	JGI2161J19892_10062204	F061862	MKGTFKMQDEETIWYENYEPVQEYLDREFSRKSASAEKDPKKVKFSWLEIMKKSFHIK*
JGI2161J19892_1006313	JGI2161J19892_10063134	F041201	NRILVPDRGGAEFQTAGNLWVFEDLKRGTNKDMGPKDIFEMVSSA*
JGI2161J19892_1008362	JGI2161J19892_10083623	F034761	GSKTVKTRVTDSSASTSFIVAYASITGPTICNVAKGPIILEESDSVSIESSTTSAITATLAILEISREDQNG*
JGI2161J19892_1011125	JGI2161J19892_10111252	F088283	MKLKAPVLVCSFAFAAGCAADVNITGSYTPSCAAFEGNTIELAEDRFTWDKFTDEVTVDADGNKIDPFPGFPVRGTYVVEDDVVRLTTDVGELAGEMHLVRRPDQVYLLTGEEFDSWQRDGTVPTCALLLGSGE*
JGI2161J19892_1017223	JGI2161J19892_10172232	F061862	VKGAFKMKDEKTLWYENYEPVREYLDREFPRKSTAAKKNPKPVRFSWLEIMKKSFRIK*
JGI2161J19892_1022109	JGI2161J19892_10221091	F050381	MKKLIIILIIVLLPAVAFASFSLKLDNNTAKKMVYMLYWVDHNYDWPHPINLAGGELQARETVDLKENLQTGKYYVIWSNKEGWQNKIMMNASDAVKSVIVTPIKSSMKK*
JGI2161J19892_1028492	JGI2161J19892_10284921	F090406	MKYERNILWWIIVLVGLASCSTTLTSVDEKGGNVYALPPTVVDQMLKDAMATEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD*
JGI2161J19892_1030615	JGI2161J19892_10306152	F055742	MTASTRGFTFKPATINDVYELTSQMLDRGLQDFERVGQHPVLSLALYIHEDDSYLIYGPDGSLYGAYGVSEDNAVWIQMTNKVKDNPRTTVRFGKALMEHINRPYLWTTID