3300001662: sbbS

Overview

Basic Information

• IMG/M Taxon OID: 3300001662
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096604 | Gp0052953 | Ga0012540
• Sample Name: sbbS
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3376410
• Sequencing Scaffolds: 1
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Santa Barbara Basin, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Basin, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: California, Santa Barbara Basin
• Coordinates
  • Lat. (^o): 34.2500169
  • Long. (^o): -122.2912323
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F050481	Metagenome / Metatranscriptome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
sbbSud_100224	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	717

Sequences

Scaffold ID	Protein ID	Family	Sequence
sbbSud_100043	sbbSud_1000433	F050481	MMTTKEISEIIVALKLIKPQTQQIKLKIQKLQQQLNKDV*
sbbSud_100224	sbbSud_1002242	F008782	MKKPIFRVFVSYEIKSKKVVTRKVITGILDTFVLTSNTKEIENDQELIDRICYINKKNLNKVDVIITSIDIENQYGETADRFDDEY*