3300001649: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038

Overview

Basic Information

• IMG/M Taxon OID: 3300001649
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057363 | Ga0003877
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4882491
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003343	Metagenome / Metatranscriptome	493	Y
F004146	Metagenome / Metatranscriptome	451	Y
F022644	Metagenome / Metatranscriptome	213	Y
F023941	Metagenome / Metatranscriptome	208	Y
F035094	Metagenome / Metatranscriptome	173	Y
F037452	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20272J16309_100009	Not Available	2824
JGI20272J16309_100018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2659
JGI20272J16309_100093	All Organisms → cellular organisms → Bacteria	1592
JGI20272J16309_100358	All Organisms → cellular organisms → Bacteria	942
JGI20272J16309_100600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696
JGI20272J16309_100720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20272J16309_100009	JGI20272J16309_1000093	F022644	VGHSQTKGRDNGEPKLRPKPARQSSTLLIGGLRERSSRQGRSLAGGKSPHRQLPVFGRLAYPMRGEATNRVLLGRKSPGCPAGVFAAVGTIWGASKLGGRNITKYLQPRNSPLARSRFKRDRCGKPTHFPVGKADDTVEETGASTRCTAGVGDPASKERLLEITSGSCRGQQGLVTTCKDSPNEAKSRRRREPNGSGA*
JGI20272J16309_100018	JGI20272J16309_1000181	F037452	MGSSFLSEVDDTSILRTGALHRYHYPLTWLPASRLLPPRSGLERSDFVHW
JGI20272J16309_100093	JGI20272J16309_1000932	F023941	SDSLLEGDGFELVWGFSCQVVVLGFAESSLFGAGKPFFIPSPAIRFPERAEGVKGPKR*
JGI20272J16309_100358	JGI20272J16309_1003581	F035094	AKWLTENELSDLSRLWHDGCVKATIETQDVDRNHSSEV*
JGI20272J16309_100600	JGI20272J16309_1006002	F003343	MKPSSGDKQVGLASPRESAASQSEKTNNPSKDVVRNEVGLDVSHHTRISRRGGEKLFLLTSPFIG*
JGI20272J16309_100720	JGI20272J16309_1007201	F004146	RRAKAAGRRAASRSRYALDPAVIAAGKLPDKAPVVTSAANPHYQKRFDELHKLAAAGDWAAVRDYKVSGSNSYSKLVARYQQDLLALHAASGDAQ*