3300001639: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003

Overview

Basic Information

• IMG/M Taxon OID: 3300001639
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057254 | Ga0003842
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6998714
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005508	Metagenome / Metatranscriptome	398	Y
F015231	Metagenome / Metatranscriptome	256	Y
F018240	Metagenome / Metatranscriptome	236	Y
F020058	Metagenome / Metatranscriptome	226	Y
F033191	Metagenome / Metatranscriptome	178	Y
F056367	Metagenome / Metatranscriptome	137	Y
F061335	Metagenome / Metatranscriptome	132	Y
F071373	Metagenome	122	Y
F092770	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20237J16298_100145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1446
JGI20237J16298_100349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034
JGI20237J16298_100603	Not Available	805
JGI20237J16298_101034	Not Available	644
JGI20237J16298_101245	Not Available	593
JGI20237J16298_101341	Not Available	578
JGI20237J16298_101465	Not Available	558
JGI20237J16298_101668	Not Available	532
JGI20237J16298_101680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20237J16298_100145	JGI20237J16298_1001452	F071373	EQFLMVKRKDGSRVKRGPYPLLTRKHGQKTVSLRLTDPALLPLYRQQIQAMRQFETVVDGLVRVGEQLSDLAVAEVVQKKTPGGTGTSR*
JGI20237J16298_100349	JGI20237J16298_1003492	F033191	FVRRDSAVKLIDGLAGESPASADCPVGTVVISGDGAGDQTVGSPDVNVLDGWT*
JGI20237J16298_100603	JGI20237J16298_1006032	F020058	MIASKGGASEPADTLLLGKAGGAAAVRRTLASTICRAIGPMLVARQRQLRDASPVMRFRPAHQSLINRRFDGRASRPT
JGI20237J16298_101034	JGI20237J16298_1010341	F061335	MSDPRRMARGFGLSFLVGLSGLVFGLSGAASAQGYLPDGPNVPIVTLNESQEGAAGLPPLPVPPPNGWN
JGI20237J16298_101245	JGI20237J16298_1012452	F015231	VSPKRRLRGSRGRLTAGQKSAEGIVGQAVGKASEALQGRKAERTDRPSRNDDAKARTIESGK*
JGI20237J16298_101341	JGI20237J16298_1013411	F018240	VTRSSQQAQRAAERQFPVRARTAVPPEGLGRQLALMHAWLDQTCGAAGWSSAPAGTAGVVNDAIVFYFEDAAFAHAFVVRFCCGWRVETTAGAFAVRREEPAPRHPAVAHKTP*
JGI20237J16298_101465	JGI20237J16298_1014652	F092770	MSEGARHRPLGRGLAALFGETEGGASFDPASPRRVPI
JGI20237J16298_101668	JGI20237J16298_1016682	F005508	MAYQVFRVEITRDETRDGGPVGIEITAYVDRMPETNEATIGRLSRASRGVWNS
JGI20237J16298_101680	JGI20237J16298_1016802	F056367	MPRLPIFRLGKEPEKLAPPEMIAATPSLALEGLAVGVDNLRHDVVLSPRFVDAARAQITR