3300001587: Marine microbial communities from the Deep Atlantic Ocean - MP2634

Overview

Basic Information

• IMG/M Taxon OID: 3300001587
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054720 | Ga0000756
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP2634
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70795660
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Archaea	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Northeast of Antigua and Barbuda, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 20.0
  • Long. (^o): -52.63
  • Alt. (m): N/A
  • Depth (m): 4002.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y
F012125	Metagenome	283	Y
F089570	Metagenome	109	N
F089571	Metagenome	109	N
F096028	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12001J15744_1005700	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1641
JGI12001J15744_1012235	All Organisms → cellular organisms → Archaea	1005
JGI12001J15744_1016956	Not Available	808
JGI12001J15744_1024963	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	618
JGI12001J15744_1029709	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12001J15744_1005700	JGI12001J15744_10057001	F089571	DNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK*
JGI12001J15744_1012235	JGI12001J15744_10122351	F012125	MSDTRYSVMHPDSGKDSFFSAGKPKNLPRFYFLVLAGIFLMIFMFLW
JGI12001J15744_1016956	JGI12001J15744_10169562	F096028	HITISVDFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
JGI12001J15744_1024963	JGI12001J15744_10249632	F006423	MKTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*
JGI12001J15744_1029709	JGI12001J15744_10297091	F089570	KIPLSESERPSLDFNEKQKTIVSNALSNCGDYNFDDLLNTRKKELGISEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFL