3300001570: Marine microbial communities from the Deep Pacific Ocean - MP2016

Overview

Basic Information

• IMG/M Taxon OID: 3300001570
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054769 | Ga0000768
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP2016
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28067177
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Hawaii, North Pacific Ocean
• Coordinates
  • Lat. (^o): 18.04
  • Long. (^o): -133.26
  • Alt. (m): N/A
  • Depth (m): 4004.03

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041257	Metagenome / Metatranscriptome	160	N
F069480	Metagenome	124	N
F071317	Metagenome / Metatranscriptome	122	N
F089571	Metagenome	109	N
F092695	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12211J15759_100066	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	5183
JGI12211J15759_100226	All Organisms → cellular organisms → Bacteria	3521
JGI12211J15759_101086	Not Available	2057
JGI12211J15759_101230	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1949
JGI12211J15759_103613	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1137
JGI12211J15759_106062	All Organisms → cellular organisms → Bacteria → Proteobacteria	837

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12211J15759_100066	JGI12211J15759_1000662	F089571	MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE*
JGI12211J15759_100226	JGI12211J15759_1002267	F071317	MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTMSDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYIACFGNYDPGPMASLNLPLLI*
JGI12211J15759_101086	JGI12211J15759_1010861	F041257	FDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ*
JGI12211J15759_101230	JGI12211J15759_1012306	F069480	CLIYIELIDRIYILESRNNIKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL*
JGI12211J15759_103613	JGI12211J15759_1036132	F069480	MRPMPNHIELIDRIYILESRNNIKRVEGNAGQILDQAPKNKPYNTVKTVFFSVFKPVVFL
JGI12211J15759_106062	JGI12211J15759_1060621	F092695	LTIEGRKTAKVDGGYDGGKYIKKVNNFAITCKYWWRGKDLNLRPSGYEFYVPQYFWIILRYTN*