3300001569: Marine microbial communities from the Deep Indian Ocean - MP0960

Overview

Basic Information

• IMG/M Taxon OID: 3300001569
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054435 | Ga0000794
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP0960
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80805655
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Madagascar, South Indian Ocean
• Coordinates
  • Lat. (^o): -27.98
  • Long. (^o): 63.25
  • Alt. (m): N/A
  • Depth (m): 3504.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006552	Metagenome	370	Y
F029128	Metagenome	189	N
F032684	Metagenome / Metatranscriptome	179	Y
F097524	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12090J15751_1005176	Not Available	2405
JGI12090J15751_1011460	Not Available	1387
JGI12090J15751_1013354	All Organisms → cellular organisms → Bacteria	1247
JGI12090J15751_1015995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1094
JGI12090J15751_1032868	Not Available	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12090J15751_1005176	JGI12090J15751_10051763	F097524	MFENDNLYLPVAERRPFVNVQLKTAETISXAXTXLGPQ*
JGI12090J15751_1011460	JGI12090J15751_10114604	F006552	LLISPVLKIKSSRINPVANIPKPIPIAKKAIDILNNVGLPVFLNPIYEIVPITRPTKSPTKFRIISRKNSNYADSATVLNKVSEQVF*
JGI12090J15751_1013354	JGI12090J15751_10133543	F097524	MFENDNLYLPVAERRPFVNVQLKTAETISAAETQLG
JGI12090J15751_1015995	JGI12090J15751_10159951	F032684	MRLLCTLRVLALIDKFKSNFSLFKAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFAKQNEI
JGI12090J15751_1032868	JGI12090J15751_10328681	F029128	MKNKIIQIVIMIIIGVGGFYGGIYYGIMKTDVYIENLMSEFEKISDDVDAFVKVSDPETIRHYVKELNKILDDIKYLGKMVESGQLADEALTEFFNSYQNKLDNLNERVVVLALETQGMLSEISGEVKSDLRTNKVELENKLKSESDSVRKEIRKLYDKTDELYKELEQVSILLDKAKETFIGKQVFK*