3300001528: Virome of Chimps sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300001528
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095260 | Gp0056250 | Ga0012982
• Sample Name: Virome of Chimps sample 1
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 448696896
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → Viruses → unclassified bacterial viruses → virus sp. ct6GG30	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Primate Fecal Viral Communities From Gombe National Park, Tanzania
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Primate Fecal → Primate Fecal Viral Communities From Gombe National Park, Tanzania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Gombe National Park, Tanzania
• Coordinates
  • Lat. (^o): -4.4
  • Long. (^o): 29.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F036964	Metagenome / Metatranscriptome	169	Y
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F084822	Metagenome	112	Y
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
chfe1id_10003649	Not Available	10811
chfe1id_10006391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6388
chfe1id_10025691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2353
chfe1id_10033279	Not Available	1954
chfe1id_10059743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2262
chfe1id_10066990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1174
chfe1id_10104187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	852
chfe1id_10194357	All Organisms → Viruses → unclassified bacterial viruses → virus sp. ct6GG30	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
chfe1id_10003649	chfe1id_100036499	F036964	MQILKLIFPALMVAGALGSLVVNILSKGDRATSLQWLGAMILYTALMLRNYK*
chfe1id_10006391	chfe1id_100063916	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGQFLHGGILMGIALPIPSYRAKSHDFACWWTAAAGHSRSANALPGKSNP*
chfe1id_10025691	chfe1id_100256912	F084822	MANYEENMYNWLKRKGFAEKYEHAGIYCIKIDQKIVYIGKSTNMLRRVS*
chfe1id_10033279	chfe1id_100332792	F026592	TASPQGIDAQASQGSVAPLTERSDEAFLVMQFSSADGE*
chfe1id_10059743	chfe1id_100597432	F062845	MEKTPFILHEKFRSDDSEQRKEHFQKEFERYIVDGLSNTAPSKSCV*
chfe1id_10066990	chfe1id_100669902	F032286	VTPVRRRALVFDARLFVGNAADDALVTGGTFRFCRLMCLCVKRRNIILNGKCRSLFDSALFRADNRTGQKTISPFSLALFFTFDFAALSERRSCPGLSPRRFVLLGALDAALRRRTYPVRTVMQFSRFRCDCKTILAKKHALSRISKR*
chfe1id_10104187	chfe1id_101041872	F092227	MNEEKRKRFLRIGCLLLAGVFLLSVLGSVVLMLLA*
chfe1id_10194357	chfe1id_101943571	F067720	MASTTYEHFVDTNKMYAVQEQFRHVTKMVCDFVKINKIDLFAALGNMARNAGQLPQPFWLGAACGGGSRSAAPCAART*