3300001477: Sheep rumen microbial communities from New Zealand - Rank02_low

Overview

Basic Information

• IMG/M Taxon OID: 3300001477
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053113 | Gp0055565 | Ga0012971
• Sample Name: Sheep rumen microbial communities from New Zealand - Rank02_low
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 220428912
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Palmerston North, New Zealand
• Coordinates
  • Lat. (^o): -40.352
  • Long. (^o): 175.608
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019573	Metagenome / Metatranscriptome	229	Y
F032474	Metagenome / Metatranscriptome	180	Y
F083362	Metagenome / Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
rank02_1106661	Not Available	507
rank02_1159523	Not Available	513
rank02_1177877	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
rank02_1106661	rank02_11066611	F019573	MSYIPQEFGTSSVQAEPLNLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKIVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAQTSIPQF*
rank02_1159523	rank02_11595231	F083362	MNSQYMKSLSNREILRKDDPNDVYKQPIPLDMINKFVGLDSRILLQDDTVQKQAFDQSYKNFWSFVDFNMKFDGNMLKNVNTCNHLFSQQVKPAHSMTVGNQCSGVQMTYQEARERANKLSQ*
rank02_1177877	rank02_11778772	F032474	MEVQKNIKQCEICKDREAITLCFDCHFYFCEACYKFVHDIKKNSSHKKEKIDLFVPIDTTCPDHGRVPMNLFCIDDKGNIYYNNNIILI*