3300001458: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - gte1k

Overview

Basic Information

• IMG/M Taxon OID: 3300001458
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0055933 | Ga0012421
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - gte1k
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153768584
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid Cayman Rise, Cayman Islands, United Kingdom
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000 to 4000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003092	Metagenome / Metatranscriptome	508	Y
F003827	Metagenome / Metatranscriptome	466	Y
F010921	Metagenome / Metatranscriptome	297	Y
F012582	Metagenome / Metatranscriptome	279	Y
F015945	Metagenome / Metatranscriptome	251	Y
F017150	Metagenome / Metatranscriptome	242	Y
F023708	Metagenome	209	Y
F046425	Metagenome	151	N
F047906	Metagenome / Metatranscriptome	149	N
F078613	Metagenome / Metatranscriptome	116	N
F081450	Metagenome	114	Y
F089571	Metagenome	109	N
F100047	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MCRcombined_1005377	All Organisms → cellular organisms → Bacteria	4154
MCRcombined_1007582	Not Available	1293
MCRcombined_1009965	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1490
MCRcombined_1012441	Not Available	1020
MCRcombined_1013643	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1910
MCRcombined_1018701	All Organisms → Viruses → Predicted Viral	1511
MCRcombined_1018779	All Organisms → Viruses → Predicted Viral	1359
MCRcombined_1019315	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1201
MCRcombined_1019725	All Organisms → Viruses → Predicted Viral	1298
MCRcombined_1023359	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	4381
MCRcombined_1025209	Not Available	1201
MCRcombined_1026387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium	1223
MCRcombined_1032716	Not Available	1000

Sequences

Scaffold ID	Protein ID	Family	Sequence
MCRcombined_1005377	MCRcombined_10053773	F047906	VQEERRLFRLRGIAIVALAAKFTQKRTVTKEHTPDAIRVPVAHRPVVGLGVLAVRWHHAVTKVRVALRLDMLAVAKRVSRVEIKFAVTAKAGLVQTQRLAVANAVVIRIVVAERVA*
MCRcombined_1007582	MCRcombined_10075822	F100047	MALTIARTETQLTTVAGVFQAMDNLMASTVSSSFVCPATVSKLVSVEVCTTADASEEFGVLIRLSGNSLSDGEQYVAGGANVASTTATGTAMNYVSKDTDFNVISGNSIECAIATTDAAVISATVVMTFA*
MCRcombined_1009965	MCRcombined_10099651	F089571	MIKKDRKMYQNIIVLMIPILFLITPAKSQHVKQKYATTEMDEKLILNENGTWEYLGEDKQNYTLKKVPPKTYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN*
MCRcombined_1012441	MCRcombined_10124412	F010921	MAIKVKGRVKIVEGKAYVHPLTIPELEFLLTIVADAGHKMEDVPKVLQVTKKLREEYKLIKEHQST*
MCRcombined_1013643	MCRcombined_10136432	F089571	MMNMVKEKERKMLQNIIVLIISVLFLIAPVSSQHVQQKYAITDKNEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK*
MCRcombined_1018701	MCRcombined_10187011	F078613	MEYSDWIESPKSARVWLEDSMTTLCQFAYVTPLHKVMHWDDINKRRTLCYQGKYEKCTTCDRGIPQIHDYTYGIYTSSGDKSIRYLSTALSSHTNFQTIFRDYLKANTNPCDLLFQIRKGDIVTPKGYETKGYEIEVLEDEPFIAEADRPSPFQEGKWAIPRMVAEALLDIDGHPMNLLDLYTEMKERFPNIEDRDIKEYAILLGEGGVVDLRNAKEKEWAI*
MCRcombined_1018779	MCRcombined_10187792	F023708	VISLKSLLKNLKEAQITMPIKGMETPLDAKVQIPGYGVMTRRQLQKSIQRFIKEVSKY
MCRcombined_1019315	MCRcombined_10193152	F003092	MFKKLLLVMSLLFTFSCEDNIVAYVDEETSMKLWLNGVEVDVEATYEKITTYGEEVEYIADNGHTYTKKIFVIHFQEEGGRVELDKEHYAIVFTDWEGSTSNNQPVDVGNYKWPAECPICVRKCICDHGAPSKWVRMEIFGEEDVAVSGVARISRVDEKDGGWIISGNGEGIFYDPYTEANIEGKIEFNNLEMKTDSEESPYYDYGGR*
MCRcombined_1019725	MCRcombined_10197252	F081450	MTQFEEKSCKVLGVIIFLLVVMTWLQISGCYSPPQPEMEGEPFPDYIDDVDTSNLV*
MCRcombined_1019725	MCRcombined_10197253	F012582	MTEFHKKLRHLSTTMLHWAEDNKTQRKEIEGIAGDYEIPQRNGVDWKEDFKFVTKLDRMLSSDIGDKLKKKEMKMCNKLYRYYGSVYDPV*
MCRcombined_1023359	MCRcombined_10233591	F003827	VAEGRWADWQVRTIAENMAEKRPKREWFEGDGHGEDYLTSLKSWSHITARQLYSMELEERQLIIFVHHLGIEHVGIETFDPQDKGRYAQQSDYAPSEGDTYNTPRLDIAGSE*
MCRcombined_1025209	MCRcombined_10252091	F046425	MNLIIDKGCFKIYYRDPVSTGNRLFLSTRTATLMDAVAEFNLIKGGFDTPLRVERYNFDGKLTDVFNMDGXXXXTMDGRYDVPRRKDDAYSLDLVDRMGI*
MCRcombined_1026387	MCRcombined_10263871	F017150	MADRINLLVDYEDQADWLQDSIVIENVIMGQAHDQLIVELEQAVYDNTRSMYNPPSSHISIVGFSPADSDVIVKSGVNYWVDSEN
MCRcombined_1032716	MCRcombined_10327164	F015945	IAAHFSAMNDSVTLINATVADDSEALLIYGNDAEVKLMVTRNTDHLEIQAAKDWYSDSSNSKTSYTGAVTAGKAYVDE*