3300001395: Goat rumen fungal communities from Langston, Oklahoma, USA - velvetAssemble

Overview

Basic Information

• IMG/M Taxon OID: 3300001395
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090745 | Gp0055790 | Ga0012457
• Sample Name: Goat rumen fungal communities from Langston, Oklahoma, USA - velvetAssemble
• Sequencing Status: Permanent Draft
• Sequencing Center: Cornell University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1577637560
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	10
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Langston, Oklahoma, USA
• Coordinates
  • Lat. (^o): 35.453976
  • Long. (^o): -97.515884
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015548	Metagenome / Metatranscriptome	254	Y
F015816	Metagenome / Metatranscriptome	252	Y
F035559	Metagenome / Metatranscriptome	172	N
F049305	Metagenome / Metatranscriptome	147	N
F058536	Metagenome	135	Y
F062278	Metagenome / Metatranscriptome	131	N
F100044	Metagenome / Metatranscriptome	103	N
F106163	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
yes_10089088	All Organisms → cellular organisms → Bacteria	4464
yes_10433603	Not Available	645
yes_10860132	Not Available	626
yes_10942288	Not Available	562
yes_11191977	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	773
yes_11423168	Not Available	740
yes_11619525	Not Available	606
yes_11860731	Not Available	633
yes_11892400	Not Available	900
yes_11992805	Not Available	622
yes_12139387	Not Available	596
yes_12625626	Not Available	926
yes_13074086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1159

Sequences

Scaffold ID	Protein ID	Family	Sequence
yes_10089088	yes_100890882	F058536	MKTLALSELRRVAERTQMVTRKIPDEQGGFQMVQVQERIPWRVWYVAASNGDCIRGDECVTLSVELNGPGAYPSRLVQFTASGQTRRLRDVCILQANDFRLVL*
yes_10433603	yes_104336031	F015816	IYLERRRRSKHEQEGRDFICDFPNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKAAGDFESTKYEIFFNNSPRCPEEGKTINTLNVVKEVFELIYKGSHMDKLFSHPQSFEENPILDNLNKDSPISDKPKNTKSCDEVFYEYLKTFKDKTNEKYFALLIKFVLLFRECYDNSKTKDSKEEEKKPVTDHVSPEGLPDLCNEFYGEF
yes_10860132	yes_108601321	F015548	MGQEFHVDVMIEKNIIGIDSEKAKERVPQTVVFLIIIMQGYPQIPPEILTKSNFCSPSLMDGRDLMKEICPSWNSKSGFKTILEGFLPFLSRVINAKGYKFYGTFHLGATYNLKNFDNMI
yes_10942288	yes_109422881	F049305	MCAQKDEKLQIVAFSTNDDRQTPNDIINIFLGQQNHKILKKSKLAIAFSTQLKNKETRIMICSVLNLSKEYTGITDVNCYLLFIDLEKSDSIDRLKNIINYARDNCRLTKKIFVLGMVSGNEDEEIKFTKDDVTQILDEFKARYEYKEINLSKIKEISDIMIGIFDYSSQHPIDEDEEI
yes_11191977	yes_111919771	F015816	TQVINFLNYFFLNIIFYFSIERHRRSKHEQEGRIFACDCGKSFLSQPALNNHKKTKHPELLEGLPKRGRGRPRKYPPKTAGDFETTKYEVFFGSTNRAPEEGLTINTEEVVKEVFHFLYEGQYANKLFSHPTAYEENPILKNLVDNSYVPDKPKNEKTCDEVFYEYLHIFQSKTNKKYFSLLLKFVLLFRECYDISKTKDSKDEVKKAVTDTISPEGLPDLCNEFYGEFMEPNNFFGIDEPDEKNEIIEIIQHFCIW
yes_11423168	yes_114231681	F106163	MKRLLYLLPLALLLLAGCKEKGSFSNVEIGESWLCRLVFEDESFKDYVVTADVLYAGEDTSSRYKMVFYMPEGWDNSYPIFLDRYVPCDGPAWQAYQGMPVAEDALKEGNMIVVLVAYSEWTAIPDILLAEAFLKQHDADLPGDSRNILTAADFDFETAAYYDFE*
yes_11619525	yes_116195251	F035559	LLLSLLSFTLCEYSGVKAAITSNFFKILTKYDLNKILQNQTIIDTAEMSGQALFNYEVQVTNLWITYFKNPENVTIDQETTSDGLPQVKVTLTNVEVAIEIEHLYVKYGLISDNFYNADGDIKFSLIEGRYHFSSDGKLVLSEFNVEVEDLTIDVRKDFLNWLIGLFKGLIKSKVTDKLQELGATLQTKVNEIIENEFTVD
yes_11860731	yes_118607311	F106163	LLLLAGCKEKRSFTEVSCGEIFLSHIVFEDESFRDFTVVTDVLYAGEDTSSRYKMVFYLPEGWDQSYPLFLDRYVPHAGEAPWTAYQGFPAAEAALDRGDMIVVLVAYNDETAIPDVLLAEHFLKVHDDDLPGDSSKILTTAYFEFE*
yes_11892400	yes_118924001	F100044	EKDLFLKNYFPAFTSYLSLEKLEQKIPSYRYLNDELKRLEETSPESTIKHVMGKKKLLISKNAKQLCRDGIPIKHIRTILLKMFNVSFSKEDYENKRKEVLKGREFSEMGDQVPTFCDKSLSEILPFHYLNDKGLEALKEVLWLLNGVLPKLEYAPGIVGLSSILLLFLSKEETYELVRNVIEADLNPGEITNIRWHFRYTMDDNIKLYISVALAIVEISKQEIVQQFQLIEKHGLRRIKLVQELADKFLIDYINFIGIIKFLPFFLYEGAKGIYRFIYGIVALCHFKIEKKEEEKKEEE
yes_11992805	yes_119928052	F106163	GRKKHYFSNISTGETYLCAIGFDEDSQKDYTVVTDVLYAGTDTSSRYKMVFYMPDGWDDTYPLFLDKYVPIEGGQPWTAYKGSPVAEAALKEGNMIVVLVACDEETAIPDVLLAEEFLKKNDADLPGDSKIILTSAYFDFE*
yes_12139387	yes_121393871	F062278	FVTEINTSNNKYTLNDLYPYEIKNYLFSCSDLGTITVFDLGKPGQEKTTKELSFFNYYEAKIKIKSVLYDSDTNQVITGDNYGRLIFWSLKYGKPIHCTKVTPNGKGICKIRFIENSEEPNKLLLVSCLDNSIYFVKLPLKWVENEDIEKYEQVEIKVRSDLDAMMKIQDFLAKDEDYNSDEDSLNGWDYFANDAKEE
yes_12625626	yes_126256262	F106163	RLLIICLGLLLLAGCKEKRYFKEIPGDNWLCQIGFDDGSKREFWVVSDVLYAGEDSTSRFKMVFYMPDGWDDSYPVFLDRYVPENDYVSAYTAYQGMPVAEDALKMGNMIVVLVAYNEWTAIPDILLAEHFLKEHDDDIPGDSRNILTAADFDFEPVVEIE*
yes_13074086	yes_130740862	F106163	MLEYRDMKKFILFAAAALLLLTGCKEKRYFTTVTYGETWFAHIGFDDDSSVNFMVVPDVLYAGTDTSSRYKMMFYLPDGWDDTYPIFLDRYVPLEDDFSQPWQAYQGAPVAEAALHEGTMIVVLVAYDEWTAIPDILLAEDFLKKNDADLPGDSKNILTAAYFDFE*