3300001377: Goat rumen fungal communities from Langston, Oklahoma, USA - Assemble1

Overview

Basic Information

• IMG/M Taxon OID: 3300001377
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090745 | Gp0055789 | Ga0012438
• Sample Name: Goat rumen fungal communities from Langston, Oklahoma, USA - Assemble1
• Sequencing Status: Permanent Draft
• Sequencing Center: Cornell University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83468785
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Langston, Oklahoma, USA
• Coordinates
  • Lat. (^o): 35.453976
  • Long. (^o): -97.515884
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002486	Metagenome / Metatranscriptome	555	Y
F031714	Metagenome / Metatranscriptome	182	Y
F056990	Metagenome / Metatranscriptome	137	Y
F076635	Metagenome / Metatranscriptome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
yes_1017911	Not Available	793
yes_1021995	Not Available	722
yes_1030112	Not Available	621
yes_1031285	Not Available	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
yes_1017911	yes_10179111	F002486	IREHGDMLDVSINGKFQTVPKCTCGKCIVRRLRENLFTPFPYAKDLASTYKDDYDWKTNPKEGPEYNRSKHNSFEGAYKEHIPTSLISTAKMSYKPFKVREERKQKPEEEPYKIPFIGKSTYNRHYPDWGTSEPQGDKVPPPEEIIVPLRGIPNYKESYPRYDDKYYTNGEPLNFTKPTLKFDGELDPRTTYNEAFKPTDLGNKHYFPDDKLINGAKGENTALMSGPNAPGILGTTYRRDYIKYDDAMCKLRKWLNARNMRYLV
yes_1021995	yes_10219952	F031714	EVVSGLTDILKNVLSKPKFEKSEIANRFCEFVDMLSSRSNGVLWSFARKVKDGEVLISFLKELATKGCISQIDKIFRSGGYRCPLVNQLSKYYETKEKFNELFKMLPEEYRDKLSGEIISYQDGDKDYAYPLIGGSALMGF*
yes_1030112	yes_10301121	F076635	MIKRGSKVRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSVGQIYLEETGIALIPGVDEYE
yes_1031285	yes_10312851	F056990	ELLQFLNRRSSSGRFDPIISEKLFEVLSLDEMSNISVEEFINGFLQFEEEIRKNAELFSIKLAKEEEIYAQLSEEFRKYKEEKLNAEGLCEDAKVYGEITEIDIKRKLEGIKEIIIKVVFNEKSEELHFKIGDLNSANEMSNKTFEFKPTSRKDHFEFIMKGINDRNQVFDIGSKVFPLTEVSSHEEYLVQIVVPEIENEEQ