3300001370: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001370
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0054390 | Ga0000698
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4006525
• Sequencing Scaffolds: 10
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
Not Available	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F003618	Metagenome / Metatranscriptome	477	N
F004315	Metagenome / Metatranscriptome	444	Y
F005196	Metagenome / Metatranscriptome	409	N
F007507	Metagenome / Metatranscriptome	350	N
F016479	Metagenome / Metatranscriptome	247	N
F018650	Metagenome / Metatranscriptome	234	N
F028361	Metagenome / Metatranscriptome	192	Y
F035561	Metagenome / Metatranscriptome	172	N
F038479	Metagenome / Metatranscriptome	166	Y
F066278	Metagenome / Metatranscriptome	127	N
F079377	Metagenome / Metatranscriptome	116	N
F098293	Metagenome / Metatranscriptome	104	N
F102145	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13872_100001	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	8632
B570J13872_100150	Not Available	1289
B570J13872_100307	Not Available	1062
B570J13872_101216	Not Available	660
B570J13872_101330	Not Available	641
B570J13872_101385	Not Available	630
B570J13872_101407	Not Available	627
B570J13872_101568	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	599
B570J13872_102029	Not Available	542
B570J13872_102098	Not Available	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13872_100001	B570J13872_1000019	F102145	MVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVILQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13872_100150	B570J13872_1001501	F018650	DWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13872_100307	B570J13872_1003071	F079377	MPQ*SFFQTAGPTDFQNVXGISFLPANFTIXEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILVIHKLV*
B570J13872_101012	B570J13872_1010122	F098293	TITFTLQNLISDLGAIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKKAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGXAFNVNAFHICQTTHLLQHNIIAV*
B570J13872_101216	B570J13872_1012161	F016479	REKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQ
B570J13872_101330	B570J13872_1013301	F007507	VSKYGLSREYVHFQQILETHLPLIIDIKLDQDIEDDLAQTSHKFRGAIQKFLKNKKKAKLSYPDKKSYDFALHELVMRKEYTPSTPLKPTYIGPYRIMELFPQGSLLKDPRTGEQMSVHFANMRKLSMDEFITLLPTHFDADILKTLGLFRYNRKGNPESIKKAEEAEIIKQNTLSEGEQDERREPDNCSSTNDTEEFSPQTARILRSGRKIN
B570J13872_101385	B570J13872_1013851	F004315	VELGQASAFLYSEARLYKGPSQSALPQLTATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED*
B570J13872_101407	B570J13872_1014071	F035561	MDLVTPNFRLAESVLETLSESQLECYICQHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWTSYEWALGGRRPTFRGKTIWNWQPL*
B570J13872_101554	B570J13872_1015543	F028361	LTYEEFVNKSPEHYMDMVRLIDIKQKYRMEFTEAEKEINAHIMEF
B570J13872_101568	B570J13872_1015681	F001507	MTQTYKPYTINELVCEIYEDNLSHFEFEENMGGEPCDCNLHITMETIVKYWG
B570J13872_101801	B570J13872_1018012	F066278	MAASCSDGGAAVCSDSDEHIRHVSGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCG
B570J13872_102029	B570J13872_1020291	F005196	KDNTLKVLPAPEARSLRSRENEAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEKRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPSMDCEPKVKKGL
B570J13872_102098	B570J13872_1020981	F038479	EQKIVKAAHLIAEGKVVSFRGASADTYLKVERLANRIKQEREFPQCPCGECD*
B570J13872_102391	B570J13872_1023911	F003618	RQTVETLKKFINITQAIPVKTVYIPVRMHQFNKMIPFQQVYSQITNLKLTLRNLDPTSXTRTEEIQGKDVNYVKSSYPRSMNQNSLQCAERGGYVASITQIVKDRLDTRTPTATRDEISISNKILTCMFTEVNKRGLSCIEYLVNIASTLGLEFYRGTPPQILMEIVT