NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001337

3300001337: Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C



Overview

Basic Information
IMG/M Taxon OID3300001337 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067861 | Gp0055688 | Ga0003724
Sample NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size62828840
Sequencing Scaffolds27
Novel Protein Genes29
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.7
Not Available14
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springmicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F038745Metagenome / Metatranscriptome165Y
F043237Metagenome / Metatranscriptome156Y
F051572Metagenome / Metatranscriptome144N
F075483Metagenome / Metatranscriptome119Y
F100050Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20131J14367_1000482All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae5470Open in IMG/M
JGI20131J14367_1001283All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens3363Open in IMG/M
JGI20131J14367_1001362All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae3283Open in IMG/M
JGI20131J14367_1002509All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum2377Open in IMG/M
JGI20131J14367_1002775All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2239Open in IMG/M
JGI20131J14367_1003092All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2099Open in IMG/M
JGI20131J14367_1003651Not Available1905Open in IMG/M
JGI20131J14367_1004171All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.1767Open in IMG/M
JGI20131J14367_1005539Not Available1484Open in IMG/M
JGI20131J14367_1007838All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae1197Open in IMG/M
JGI20131J14367_1008142Not Available1169Open in IMG/M
JGI20131J14367_1011040All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.972Open in IMG/M
JGI20131J14367_1012025All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.922Open in IMG/M
JGI20131J14367_1013170Not Available872Open in IMG/M
JGI20131J14367_1014372Not Available827Open in IMG/M
JGI20131J14367_1014374Not Available827Open in IMG/M
JGI20131J14367_1014433Not Available824Open in IMG/M
JGI20131J14367_1014443Not Available824Open in IMG/M
JGI20131J14367_1021340Not Available652Open in IMG/M
JGI20131J14367_1021604Not Available648Open in IMG/M
JGI20131J14367_1023159Not Available622Open in IMG/M
JGI20131J14367_1024719All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.598Open in IMG/M
JGI20131J14367_1026143Not Available578Open in IMG/M
JGI20131J14367_1028688All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.546Open in IMG/M
JGI20131J14367_1028882All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.544Open in IMG/M
JGI20131J14367_1030919Not Available521Open in IMG/M
JGI20131J14367_1032585Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20131J14367_1000482JGI20131J14367_10004826F013155MELYQAIVVVIALANLAVTVWLLRLLFPVWRELRRIVFALDHYDFDKLVKQFLNGEKPVAEAVDIKVSEKKEEGYREITVTRIYKKPLDAREIQENFVRQMAEKLQ*
JGI20131J14367_1001283JGI20131J14367_10012832F075483MIELLLVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLAVETPQLDASKVVIKVRWLFSEEIHMKYRLRIYDVAMHPYRRHHYVRWRAWMQGDNRYKCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRHWTKPEPSRGAPS*
JGI20131J14367_1001362JGI20131J14367_10013623F038745MDRVVAVVCGELMQISLVFSAYYPLCLGGPPCAFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEVLAEELGSEPRWLDALAASFFRLYLSLHKRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAKLEPGRLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAVPPRSV*
JGI20131J14367_1002509JGI20131J14367_10025091F051572KSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRFVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA*
JGI20131J14367_1002775JGI20131J14367_10027752F075483MIELLAVQAITNLALAAVVIKLRRELWPMIAGAGSEDVGFWVRSSSVLLVETPLLKAAKTAIRIRWLFSEELHLIHRLRVYDVAMRPSSRVFYKEWRAWMQGDDRYRCKVEKPRGLSKLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPEPSGSAPP*
JGI20131J14367_1003092JGI20131J14367_10030924F038745MDRAVAVVCGELMQISLVFSAYYPLCSGGPPCDFAEAVERLIRRAASARGAEELVEVMEGRVKLEELGLPAPALEDLAEELGPEPRWLDALAASFFRLYLDMHRRRRVDGRDLAFALCLWAQKKRREDPRNPLWRAAELKPDKLYTEEEAREALEINEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAV
JGI20131J14367_1003651JGI20131J14367_10036512F021443MKCLLNNKKLTFMFESSYVICYNYDYSYYQTNGILSFAVIDLAFKIIKIIKQQKRKSIILKKRKPIIHLLNYIDTLNSNFNGNKFDITFSLRNNKYKTQLIYNLYLYRCLYRRRYYEDYSLKVIERKNLCIIRLEHDYDSIIHQRI*
JGI20131J14367_1004171JGI20131J14367_10041712F100050LALVGGLVGYYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL*
JGI20131J14367_1005539JGI20131J14367_10055392F021443MKCLLNGEKLTFTFKSSYVTCHNYGYGYYQTNGILSFAIIDLAFKVIKQQKRKSIVLKKRKSIIHLLNYIDTLNFNFISNKFDITFSLKNKYKTQLIYNLYLYRSLYRRRYYEDFYRDGLIVIESENLCIIRAEHDYASRIHPKNLSLVAMLMHILEKEEVDMIDVSGIIFYCVFLM*
JGI20131J14367_1007838JGI20131J14367_10078382F038745MDRIRFIPRPSRRFSMDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVEGLIHRAASARGAEELLEAINGRVRLEELGLPAPALEVLAEELGPEPRWLDALAASFFRLYLGLQKRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELKPDRLYTEEEARKALKIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV*
JGI20131J14367_1007838JGI20131J14367_10078383F051572QYLNTRLDLCVLAALIKTAPAGSMVRLRPEIARRLVEELAAAAGQDRERIRNALLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELA*
JGI20131J14367_1008142JGI20131J14367_10081423F100050MDVIVRYILATLLALIGGWIGYSFVPIEPFGAVGNVLFMGALFGVVAGVVGFTGFFGNVVNAFLVSFLLWFVLPGEWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAKAL*
JGI20131J14367_1011040JGI20131J14367_10110401F051572DVVLEGGCKKSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGEVMAQLRRELGDKTPAEALLAKLAELFLKELEA*
JGI20131J14367_1011040JGI20131J14367_10110402F038745MDKAVVVVCGELMQISLAFSAYYPLCSGGPPCAYAEAVERLIRRAASAREAEELLEAMEGRVRLEELGLPAPALEVLTEELGAEAHWLDALAASFFRLYLGMHRRRRVDGRDVAFALCLWAQKKRREDPWNPLWRAAELKPDKLYTAEEAREALKINEALFRRLWRRALANEHAYGFQLILAALSLMATPTRSV
JGI20131J14367_1012025JGI20131J14367_10120251F013155MELYQIIIVAIALANLAVTVWLLRLIIPVWQTLRKVVFVVDQYDFDKLAKQFLNGEKPLSETIHIKATENKEEGYKEIIITRAYKRPLDPREVQENFVRQMAEKLQ*
JGI20131J14367_1013170JGI20131J14367_10131702F021443MKYLLNDEKLTFTFKSSYVTCHNYSYGYYQTNGIFSFAVMDLAFKIINQQKRKSIXLKKRKXIIHLLNYIDTLNFNFISNKFDITLPLKNDYKTQLIHNLYLYRCLYRREYYKDFYKDGLIVIEHENSCTIKTEYDYASRIQPKNLDLATMLXHILEKEXIDTINGDGIIFYCVFLM*
JGI20131J14367_1014372JGI20131J14367_10143721F021443MKYLLNDEKLIFIFRFFSVSCYNGYGYYQTNGILSLAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNHKTQLIHNLHSYRNSYRRRYYKDFYKDNLKVIERENLCIIRAEHDYASEIQPKNLNLVSMLMHILQKEEIDMIVGDGIIFYCVFLM*
JGI20131J14367_1014374JGI20131J14367_10143742F021443MKYLLNDDKLTFIFESSYVTCHNYSYGYYQTNGIFSFAVTDLAFRIIKQQKRKSIILKKRKPIIHLINYIDTLNFNYISNKFDITFPLKNDYKTQLIYNLYLYRCLYRREYYKDFYKDSLIVIERENSYTIRTEYDYANRIQPKNL
JGI20131J14367_1014433JGI20131J14367_10144332F021443MLSFAAIDLVFKIIKIMKQQKRKSMTLKKRKSIIHLLNYVDILNSNFSNNEFDIAFFLKNNYQTQLIHNLYLHRCLYRRKYYKDFYKDGLKVVEHKNSCIIRLEHDYASEIHPKNSNLAAMLMHILEKKEFDMMNVNGDNILLCISNVININITDKLSLAYIA*
JGI20131J14367_1014443JGI20131J14367_10144432F021443MICLLNGEKLTFMFGSSYVTCHNYGYGYYQTINGILSFAVMDLAFKIINQQKRKSIILKKRKPIIHLLNYVDTLNSNFNSNKFDINFSLKNKYVTQLIHNLYLYRNSYRRRYYKDFYKDGLIAIERENLCIIRLEYDYASRIQPKNLNLATMLMHILEKEEIGMIVGDGIIFYCVFLM*
JGI20131J14367_1021340JGI20131J14367_10213401F021443MKYLLNDEKLTFIFGPSCVTCHNYVYGYYQTNGILSFAVMDLAFKIINQQKRKSIVLKKRKSIIHLLNYVDILNSNFNSNKFDIIFFLENNYKTLIHNLYLHRNSYRRRYYEDLYKDGLIVIERKNLCIIKLEHDYASRIHPKNLNLATMLIHILEKEEIDMIVGDGILFYCIFLM*
JGI20131J14367_1021604JGI20131J14367_10216041F043237MDLEKTSRYIAQLSRHGYKYAILGELSNYNREFVKRIDLEGFVFYLCRLPSKREVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIARVNQILRQLYSVLAYTYNDKERVRAIRRKVKHMVVEALKRHGLKPKDAMLDYARYIVKFSDVLRKKRSKKSKS*
JGI20131J14367_1023159JGI20131J14367_10231591F038745RRSRFIPHHTIRLPMDKAVMSICGELMQASLTFSAYYPLCLNSPSCAYAEAVERLIHRAASARDAEELIKLMEGRIKLEELGLPAPALKTLAEELGPEPRWLDALAASFFRLYLGIHRQRRIDGRDLALALCLWAQRRRREDPWNPLWRVIMLKPDKLYTAEEAREALKINEVLFRRLWRRALANEHAYGFQLILAALSLMATPTR
JGI20131J14367_1024719JGI20131J14367_10247192F013155MELYQIIVVAIALANLAVTVWLLRLIIPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQEGFVRQMAEKLQ*
JGI20131J14367_1026143JGI20131J14367_10261431F043237LERTARYIAQLSGRGYKYAVVGKLSRYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDKERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLKKK
JGI20131J14367_1028688JGI20131J14367_10286881F013155MELYQIIIVAIALANLAVTVWLLRLLFPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQEGFVRQ
JGI20131J14367_1028882JGI20131J14367_10288822F013155MELYQIIVVAIALANLAVTVWLLRLIIPVWQTLRKVVFAMDHYDFDKLARQFLSNEKPLSETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQENFVRQMAERLQ*
JGI20131J14367_1030919JGI20131J14367_10309191F021443MKCLLNDNKLTFMFGSSYVTCRNYRNCGYSYYQTNGMLSFAVMDLVFKIINQQKRKSIILKKRKPIIHLLNYIDTLNFNFNSNKFDIVFSLKNNYKTQLIRNLYLYRTLHRRRYYEGFYKDNLKVIERENLCIIRLEDDYASRIQPKNLSLTTMLMHI
JGI20131J14367_1032585JGI20131J14367_10325851F021443YGYYQTNGIFSFAVMDLVFRIIKQQKRKSIILKKRKPIIHLLNYVDILNSNFISNKFDITFSLKNNYKTQLIYNLHSYRNSYRRRYYKDFYKDGLAVIERENLCIIRLEHNYASEIQPKNSNLVTMLIHILDKEGIDMIVGDGIIFYCVFLM*

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