3300001328: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001328
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0055454 | Ga0011059
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31743305
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	3
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004265	Metagenome / Metatranscriptome	446	Y
F005593	Metagenome / Metatranscriptome	395	Y
F005729	Metagenome / Metatranscriptome	392	Y
F009111	Metagenome / Metatranscriptome	323	Y
F011454	Metagenome / Metatranscriptome	291	Y
F022949	Metagenome / Metatranscriptome	212	Y
F032208	Metagenome	180	Y
F034679	Metagenome	174	Y
F036989	Metagenome / Metatranscriptome	169	Y
F037167	Metagenome / Metatranscriptome	168	Y
F039883	Metagenome / Metatranscriptome	163	Y
F043699	Metagenome	156	Y
F047390	Metagenome	150	Y
F073917	Metagenome / Metatranscriptome	120	Y
F077992	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
A1065W6_1003558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	766
A1065W6_1004101	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	507
A1065W6_1005196	All Organisms → cellular organisms → Bacteria → Terrabacteria group	909
A1065W6_1008566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	773
A1065W6_1009574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	708
A1065W6_1009700	All Organisms → cellular organisms → Bacteria	1023
A1065W6_1018733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516
A1065W6_1020472	All Organisms → cellular organisms → Bacteria → Terrabacteria group	688
A1065W6_1020535	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618
A1065W6_1031817	All Organisms → cellular organisms → Bacteria	818
A1065W6_1050898	All Organisms → cellular organisms → Bacteria	579
A1065W6_1052572	All Organisms → cellular organisms → Bacteria	622
A1065W6_1061735	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	545
A1065W6_1103365	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
A1065W6_1003558	A1065W6_10035581	F077992	MWRVVAMAVAIAVGLFPSPAAGSSAWGSPRYGDPPGWCTNHSDMWTAKIVTNDPLVGMNPERDTFYGFHPNPGYDDWYGYFYGDFRGTAGDASGWVRLLHEDYPNHYHWNFADNGWA
A1065W6_1004101	A1065W6_10041011	F034679	MIRYASGLLLVACVAVPCVASAQAPWRQVYKDSDITVVFDTASVVLQSPGTWTTVTSWDYSRARVLENKKQYTRLVERAYVRCSPVRVKRVRSTVYAINNVLVRDEGEVDPRDQAHMVWDRPKPGTAGKNAFE
A1065W6_1005196	A1065W6_10051961	F039883	LGGALVAGAVIVQHGDDLFAGELTLPEKAPARRIVLPPVLKAWQRSGQPRCLLLAGRDVSGRTWDFVDETKLIKDPRRWVAGQLRELRLQGVVDFPGLTGGKS*
A1065W6_1008566	A1065W6_10085662	F022949	VPNLNHIWQRFLLASSLLIGLAIGVAATIFGYSNLTTVDVNWSVIHIDGVPLWTVAVVPVALTLIAGTLYHLMDS
A1065W6_1009574	A1065W6_10095741	F037167	MSQPMGSVGPSIAWVKVDVLTAYQRITAEMQVRGRLRETMNDSESLFHLRNVSAEPLMPGAVPLNGVPEGTFNKMAVCGIRTIDAEPPLPDQPEVIRRFVMFQGTSFMVTGAAEFPKLSD
A1065W6_1009700	A1065W6_10097001	F073917	LELVLNQRVPGAPLDRGAVESILGHKMSLTVNFDDTRPEDATLAGSLVLQRDPSSQVSRGANELARLIAGKLKLDG*
A1065W6_1018733	A1065W6_10187331	F005593	FCPEGRAGLHTFSNPTEEPARILAISAGSFPDVVAYPEHGYAWVATRDPDPELLARGGDPGIIARFEIPIE*
A1065W6_1020472	A1065W6_10204721	F011454	MPSEADLGRMIRITVDEWSPRRGPDWSDLMVRIAGTGPPAWLLYTTASAALVIILVAAYLIGSALQLGALAPQSIPGHIQP*
A1065W6_1020535	A1065W6_10205352	F036989	GVFSDPKNRWAALAQSTLTILATAFALSASFLIPILSIQVRGQISLAVAVFSIYRGIRVWWPVFRREDRDRRHMFVQSFWLLLLPFAVYVYLISGAVGLLRGDTTAILNVGGAVLSMFIVALRNTWRLVVNVEQDEPSVPSKDSPNPTGQHGNARPGMTKE*
A1065W6_1031817	A1065W6_10318172	F004265	MPRAMRSWNLLEIDTPEGSRSPVVLHSGEARAVLIGLAPGQALREHEVKEQAFVTVVEGRVRVEAGGETTEAE
A1065W6_1037011	A1065W6_10370111	F032208	MLRAAGIVALIVLAACNESPAKPSPSPTPIVAQGSWTQNLTFAGELSGHMSGIVPDVGGQKSQCTGGRTHNGETWADIFYGTVDVSGDVWGVVFQINNFRGPGTYQNSSVTVEVHNPDATKVWQSRSSDKITFVLDRSQQSGTVDAMLTNATTGKDGLQVTGHWNCRQ*
A1065W6_1050898	A1065W6_10508981	F009111	MGVMALGIGVWVLVYLAGHRGLDPAALAIAGATILISWSFGLYVLIRRVRRGPQH*
A1065W6_1052572	A1065W6_10525721	F043699	RVVLSIAVGDWSDGTNRADRCSATLEAWTEEDRVHMAFSDRAGSTWQELEVVSWQLTSAEAQAGPLREAFLRMADHIVYQDRRLRRALSRGARAQGL*
A1065W6_1061735	A1065W6_10617351	F005729	MLKLLVMLASIANCAGGVVLIGTWATMWQRVPIIVLFIGGSLLIQGAYTILYLRGDLDRWGDLATGALFAGEGLSACVGAGGLIQGIIHNVNNADMEMAPVLAGLLM
A1065W6_1103365	A1065W6_11033652	F047390	AATGVTFTINSVNGAQRTTTVSVRSISASLGGGKVIGDLQWRRSDLATWNSVTLTDAQVEQRIVVNKGLNDPWSNTIFFRMILNWTTDAPATYTASYQITLSQTVP*