3300001320: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-65cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001320
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0055459 | Ga0011178
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-65cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12063965
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015243	Metagenome / Metatranscriptome	256	Y
F046558	Metagenome	151	Y
F104112	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
A2865W6_115749	Not Available	601
A2865W6_120068	All Organisms → cellular organisms → Bacteria	508
A2865W6_122654	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
A2865W6_115749	A2865W6_1157491	F104112	EWRFHEHCTSAIDEADDSLRAVMWQIAMGVVSKTDENENFIVEACGQPNMKMARHFLXXXXQWGERRKRHVPHNAGVLVIGGDVTKKPEYDTTASVKARKWKSFSRKFREAKT*
A2865W6_120068	A2865W6_1200681	F046558	MPSLVGSEMCIRDRIGPTQFVQLPVQLSGTLMGDSLIVETDSVAEKCSSVSSALLADLHNLLIRFPTPVSQGSGWRNSVELKACQGMIPTTSRITRSYIVSGEIAYQGDLVLVVQRTDSIQAHGEGAQQQHPLTLDAKGTGNAVYYVSPRDGRIVRLNTEQDLDPVSYT
A2865W6_122654	A2865W6_1226541	F015243	RNLMKKLFGPRGIPGADSTTLKKETKLAKINATDLGSAKPRARRTVGLTEQRLRAANKQSWMTSTKGWSDFLGRFTWSSKG*