3300001261: Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001261
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055148 | Ga0000702
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11070795
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-LBS1	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023360	Metagenome / Metatranscriptome	210	Y
F026862	Metagenome / Metatranscriptome	196	Y
F029726	Metagenome	187	N
F032663	Metagenome / Metatranscriptome	179	Y
F034156	Metagenome / Metatranscriptome	175	Y
F048841	Metagenome	147	Y
F059900	Metagenome / Metatranscriptome	133	Y
F065543	Metagenome / Metatranscriptome	127	Y
F077227	Metagenome	117	Y
F077303	Metagenome / Metatranscriptome	117	N
F079377	Metagenome / Metatranscriptome	116	N
F079964	Metagenome / Metatranscriptome	115	N
F095150	Metagenome	105	Y
F095387	Metagenome	105	Y
F097196	Metagenome / Metatranscriptome	104	N
F104760	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13879_100234	Not Available	2121
B570J13879_100254	Not Available	2053
B570J13879_100326	All Organisms → Viruses → Predicted Viral	1867
B570J13879_100336	All Organisms → Viruses → Predicted Viral	1827
B570J13879_101527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	997
B570J13879_101637	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-LBS1	973
B570J13879_101644	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	971
B570J13879_101917	Not Available	912
B570J13879_102675	Not Available	794
B570J13879_103036	Not Available	750
B570J13879_103703	Not Available	685
B570J13879_105405	Not Available	574
B570J13879_105788	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	556
B570J13879_105981	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13879_100234	B570J13879_1002344	F059900	MAKTIAKKKVNVADISALAKKIRKPNEAWTAAIKRAAAQIKKG*
B570J13879_100254	B570J13879_1002541	F104760	MTLNEIQAVANLTAKFLGLSIKPKAEITTNKRGRAYTTQGRFNIPEWAFKHGEKFVIYYVVHEVCHFYGGTLDHGKLFCQVEDRALKFWGLYIQRKKVYPEPHSIFKL*
B570J13879_100326	B570J13879_1003262	F095150	MRTSELPALKLAMARHAKVGDVAKLPKNQRDVLNRYYQSTASAALGSQQSTTAVRRNIMNGYEISRDDYISEATFSDPPMMLILKRQGIRIFPDGKRVALYKNEKLGLSFTVPYSSTGPEQELTGVSEEVEDVMESLDQVAKYAQEESPKQTARHMKFGDGSKLKVSHGAAKAIHMVHGALNDENKKKFVEMLTTPKGFEKAAHFSLSKVNFSIGGK*
B570J13879_100336	B570J13879_1003361	F026862	MANHVNTHVRFEKLNDAGKAKLQELYSRVRTGSDKAVIYEWFSDIFGLDPEITDKYDWNLENIGPKWCYFEDRGEDYFNTVSAWSFPQAGLEWLFEQIVSVDPDFIASVMYEDEMPNFFGVYVYNKDGMIDGCEWGEEGEITEMMEQMVPSLKELDQEEQSEVYFDLWSENIWEIV
B570J13879_100651	B570J13879_1006513	F029726	IKARVPVWLLVGALAAQYAINSASQSIEPNCRMNVQRVHQSTYSLEFKNLSEAKLKISTLCDVPQAYTSLTVKFEEVLPNGGNNVVKTVRNIVARPKPERENYVLIENLTVPCNGKGQAEYIGKAFGQIHLKDNRTVPVSGESDKPMPSICRISAK*
B570J13879_101527	B570J13879_1015271	F097196	LLLESNQQEGESISLTAARLLRKQLGVLDGPIDKLETKTLSQLIDDRIESYREDVNSYVNNRVNELLLRIEALETKPVKTTTRRTTSKATPKESQP*
B570J13879_101637	B570J13879_1016373	F034156	VGPEFVVAALGLCGAGVTALWKIANGLGRFEARTTTILGGIQEMLRDHEERLRDVERRSEAGR*
B570J13879_101644	B570J13879_1016441	F065543	LREKELDGDIQRAMSDRFDPDLVDYALNKVKSNIQWNDDGTYVIVNSKGQERYGMDGSPLTISGLVNEVAQGNPKLLKQSSSTGGSGLRPGMGQFAGAQDDSIPDYSRDPAAFNAWASRNGLGKRVGLKGMGVTASASTSSRKII*
B570J13879_101644	B570J13879_1016442	F023360	MAYVLGGGNNEADGFTTAIAGFALRAMHESNGLVNMTNVVTPTQGNEYLVPQFAPITYQDYTPVGNAGTWGTGNANVQNPSLGQGSITATPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTKAFLSFKATPLNDFYPTSADGFDRVSALGAMELMAAGLP
B570J13879_101917	B570J13879_1019171	F095387	QTLNPTQPLECPGALSDLILQAARQALPTNPQQLIRLPDCGERNQPLMPLLVGLIDAVKVTATAVADNAWDAGPALPKDLTDSLLADLRFISQQIQAANNAF*
B570J13879_102675	B570J13879_1026751	F079377	LGISVYVQTAGPTDFQNVSRISFLPANFTIDEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILRHTQFI*
B570J13879_103036	B570J13879_1030362	F077227	MGNRCGRVVETTRHAPMGHHQAPCAPPPSINTIRQQLDDLLAQIETDQQALAAEQAAVARATEALHESPALQAALSQGQELMRGRVLMLIDHQLGMLRESPTAVLLRALRQQVREVQS*
B570J13879_103703	B570J13879_1037031	F077303	MSIQSQINDFLLTGQFTNNIDEFGNVNLYVSSSEANEQYIVFPLINFNYKKDEIENLYDVNITEIQTETVVQKQVLDQTFLNEYNKVLSENQDLKERLNQLVDEVQSDPSKSQLSAARDLIV
B570J13879_105405	B570J13879_1054051	F079964	PEVVVVDPELSVYGPVEQVTVSVDIGQTGTRGSKQFVGTGSPGPSTIVETPIANDMYLDVSTSELYQYIDNSWTIVGKFAPVTYNVNETVTFISGSADFTYDINDMFGITETTGSFVVHHNIIGTTNVIASVITQPTLTATDLDFTIKAKSLSGTTWSNLSGDYGVMISISIGEDNTSSAS*
B570J13879_105788	B570J13879_1057882	F032663	MSVPYQRISNATVADIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKMEFGWWQNYCDTVIGAYYYTNLPNGQLISSFNPNLLI
B570J13879_105981	B570J13879_1059811	F048841	YHLGTATSPSYWKSYEVEKGSNSEKLEQAAEVTGEGVFPLGMSIPVFISYGRRDPRSIEFGVSDIDAATDAQREHYKLECEAYSALQFAHTLIRADKGITIPVHAGAIVRATEGQVEAIPIDTGDVDMIIRKQDAILDQIETLTGLGGLRNTKNQIASGIAIIEERKTLHRLAKAKARLM